Factsheet for Zm00001d034351_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37410	Sorghum	plasma membrane	93.62	93.62
Os03t0785500-01	Rice	plasma membrane	77.39	76.07
TraesCS5B01G426100.1	Wheat	plasma membrane	73.04	73.26
TraesCS5D01G432300.1	Wheat	plasma membrane	72.46	72.67
TraesCS5A01G423800.1	Wheat	plasma membrane	72.46	72.67
GSMUA_Achr7P01140_001	Banana	plasma membrane	65.51	65.32
VIT_10s0003g03980.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	61.45	64.05
HORVU5Hr1G103360.3	Barley	golgi	70.43	63.61
KRH37801	Soybean	endoplasmic reticulum, golgi, plasma membrane, plastid	64.06	63.51
KRH12833	Soybean	cytosol	43.19	58.66
CDX77634	Canola	golgi	19.13	58.41
Solyc08g023460.2.1	Tomato	plasma membrane	57.39	57.89
CDY35146	Canola	plasma membrane	56.52	57.02
AT5G46150.1	Thale cress	golgi, peroxisome, plasma membrane	56.52	56.85
Bra017577.1-P	Field mustard	plasma membrane	56.23	56.73
CDY03242	Canola	golgi, peroxisome, plasma membrane, plastid	55.94	56.43
Zm00001d036654_P002	Maize	endoplasmic reticulum, golgi, plasma membrane, plastid	55.07	54.44
Zm00001d038750_P006	Maize	plasma membrane	50.72	51.62
Zm00001d053778_P001	Maize	plasma membrane	52.17	51.58
Zm00001d015401_P001	Maize	plastid	51.59	51.0
Zm00001d027401_P001	Maize	plasma membrane	47.83	48.53
KRH12834	Soybean	plasma membrane	13.62	47.0
Zm00001d046948_P004	Maize	plasma membrane	54.2	44.52
Zm00001d021371_P001	Maize	plasma membrane	48.99	43.9

Protein Annotations

EMBL:BT041045	EnsemblPlants:Zm00001d034351_P001	EnsemblPlants:Zm00001d034351_T001	EnsemblPlantsGene:Zm00001d034351	EntrezGene:100273403	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926	PANTHER:PTHR10926:SF29	PFAM:PF03381
PIRSF:PIRSF015840	ProteinID:ONM10010.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00017B761B	UniProt:B4FVA7
MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:	:	:	:

Description

Putative ALA-interacting subunit 2

Coordinates

chr1:+:290354479..290364728

Molecular Weight (calculated)

38928.5 Da

IEP (calculated)

9.302

GRAVY (calculated)

-0.244

Length

345 amino acids

Sequence
(BLAST)

001: MDEASTSASG AATRRGFVPA RSGVFYRFTQ QNLPAWKPAM TPGCIIAMFL IIGIIFIPFG LLCLQTSNHI AEIIYRYDVD CVPDAYRGNR QAYIKDSSIS
101: KNCTLEAKVL EYMRAPIYVY YELENFYQNH RRYVKSRSDK QLRFGAKYTA DSCSPVEWDN NGSPIVPCGL IAWSLFNDTY GFTRGSKEIK VNRKNISWKS
201: DREHKFGKHV FPSNFQNGTL IGGGKLDPTV PLSEQEDLIV WMRTSALPKF RKLYGVIEDD LHADETIAIF VGNNYNTYTF GGKKSIVLST ASWLGGKNDF
301: LGHAYIVTGS LSIIISILFA LIHVKYPRPQ GDPNCLSWNR KNSNS

Best Arabidopsis Sequence Match ( AT1G16360.2 )
(BLAST)

001: MSFSATSSIA LGGGSAEASA AKNTSKRPKY SRFTQQELPA CKPILTPKWV ILTFLVSGVV FIPLGVICLF ASQGVIEIVD RYDTDCIPLS SRDNKVRYIQ
101: GLEDKRCNRT ITVTKTMKNP VYVYYQLENY YQNHRRYVKS RQDGQLRSPK DEHETKSCAP EDTLGGQPIV PCGLVAWSLF NDTYDFTRNN QKLPVNKKDI
201: SWKSDRESKF GKNVFPKNFQ KGSLIGGKSL DQDIPLSEQE DLIVWMRTAA LPTFRKLYGK IDTDLQAGDT IKVLLQNNYN TYSFNGKKKL VLSTTSWLGG
301: RNDFLGIAYL TVGSICLFLA VSFSVLYLAK PRQLGDPSYL SWNRSAGGGR

Arabidopsis Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.