Factsheet for Solyc08g023460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g03980.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	66.67	68.88
KRH37801	Soybean	endoplasmic reticulum, golgi, plasma membrane, plastid	68.13	66.95
KRH12833	Soybean	cytosol	49.71	66.93
GSMUA_Achr7P01140_001	Banana	plasma membrane	64.62	63.87
AT5G46150.1	Thale cress	golgi, peroxisome, plasma membrane	63.45	63.27
CDY03242	Canola	golgi, peroxisome, plasma membrane, plastid	63.16	63.16
CDY35146	Canola	plasma membrane	63.16	63.16
Bra017577.1-P	Field mustard	plasma membrane	62.87	62.87
TraesCS5D01G432300.1	Wheat	plasma membrane	62.57	62.21
TraesCS5A01G423800.1	Wheat	plasma membrane	61.99	61.63
TraesCS5B01G426100.1	Wheat	plasma membrane	61.7	61.34
KRH12834	Soybean	plasma membrane	17.84	61.0
Os03t0785500-01	Rice	plasma membrane	60.23	58.69
Zm00001d034351_P001	Maize	plasma membrane	57.89	57.39
KXG37410	Sorghum	plasma membrane	57.6	57.1
Solyc05g054800.1.1	Tomato	nucleus	57.89	56.57
HORVU5Hr1G103360.3	Barley	golgi	61.4	54.97
CDX77634	Canola	golgi	17.84	53.98
Solyc02g036440.2.1	Tomato	plasma membrane	52.63	52.33

Protein Annotations

EnsemblPlants:Solyc08g023460.2.1	EnsemblPlantsGene:Solyc08g023460.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:CDC50/LEM3_fam
PANTHER:PTHR10926	PANTHER:PTHR10926:SF29	PFAM:PF03381	PIRSF:PIRSF015840	TMHMM:TMhelix	UniParc:UPI000276BC7C
UniProt:K4CJR3	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:	:	:

Description

Putative ALA-interacting subunit 2 [Source:Projected from Arabidopsis thaliana (AT5G46150) UniProtKB/Swiss-Prot;Acc:Q67YS6]

Coordinates

chr8:-:27701560..27715617

Molecular Weight (calculated)

39012.7 Da

IEP (calculated)

8.674

GRAVY (calculated)

-0.223

Length

342 amino acids

Sequence
(BLAST)

001: MDVEGPSTLS GNGAQSVESR SHPVRRHLDD AVYQFTQQNL PACKPVLTPA WVISMFFLIG VIFIPIGLLC LYASESVIEI VDRYDIDCVP DNLKSQKVAY
101: IKDNSVSKNC TRYLKVPQNM KAPIYIYYQL DNYYQNHRRY VKSRSDKQLL HGLQYNDTSS CNPEGENNGL PIVPCGLIAW SLFNDTYSFF NGADAINVNR
201: KNIAWRSDRE HKYGKDVYPF NFQSGPLIGG ATLDPDIPLS DQENLIVWMR TAALPTFRKL YGKIEVDLEE GDLIMVNLVN NYNTYSFGGR KKLVLSTTSW
301: LGGRNNFLGM SYVTVGSSFI FLAFVFLLLH VKNPRVKWRY YK

Best Arabidopsis Sequence Match ( AT5G46150.3 )
(BLAST)

001: MMEVEGSMNR APDQSSFLRS RRSKALYQFK QQKLPACKPV LTPISVITVF MLMGFVFIPI GLITLRASRD AIEIIDRYDV ECIPEEYRTN KLLYITDSSI
101: PKNCTRYLKV QKYMKAPIFI YYQLDNYYQN HRRYVKSRSD QQLLHGLEYS HTSSCEPEES SNGLPIVPCG LIAWSMFNDT FTFSRERTKL NVSRNNIAWK
201: SDREHKFGKN VYPINFQNGT LIGGAKLDPK IPLSDQEDFI VWMRAAALLS FRKLYGRIEE DLEPGKVVEV NLMNNYNTYS FSGQKKLILS TSNWLGGRND
301: FLGITYLVVG SSSIVISIIF MLLHLKNPR

Arabidopsis Description

ALIS2Putative ALA-interacting subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q67YS6]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.