Factsheet for Solyc05g054800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
plasma membrane 4

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54320.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P20180_001	Banana	plastid	72.86	72.65
GSMUA_Achr11P...	Banana	plasma membrane, plastid	72.86	72.65
KRH13775	Soybean	plasma membrane, plastid	71.14	72.38
KRH43674	Soybean	plasma membrane, plastid	70.57	71.8
Bra034736.1-P	Field mustard	plasma membrane, plastid	70.29	71.72
CDY08407	Canola	plasma membrane, plastid	70.29	71.72
KRH44838	Soybean	plasma membrane, plastid	70.29	71.51
KRH13042	Soybean	plasma membrane	70.0	71.22
CDY42174	Canola	plastid	70.86	70.86
Bra001467.1-P	Field mustard	plastid	69.71	69.91
CDY42411	Canola	plastid	68.86	69.45
AT3G12740.1	Thale cress	plastid	69.14	69.14
AT1G54320.1	Thale cress	plastid	68.57	68.77
CDY10503	Canola	plastid	68.0	68.59
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	67.43	67.82
TraesCS6A01G155600.1	Wheat	plasma membrane, plastid	67.14	67.53
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	67.14	67.53
Os02t0173800-01	Rice	plasma membrane	67.43	67.43
CDX79320	Canola	plasma membrane	65.14	66.86
Bra030808.1-P	Field mustard	plastid	68.29	66.2
Zm00001d036654_P002	Maize	endoplasmic reticulum, golgi, plasma membrane, plastid	66.0	66.19
EES06351	Sorghum	plastid	66.0	66.19
CDX67994	Canola	plasma membrane	64.57	66.08
TraesCS7D01G469100.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane, plastid	66.57	66.01
Bra003610.1-P	Field mustard	plasma membrane	64.29	65.79
EER88783	Sorghum	plasma membrane, plastid	66.0	65.62
Zm00001d015401_P001	Maize	plastid	65.43	65.62
Zm00001d053778_P001	Maize	plasma membrane	65.43	65.62
TraesCS7B01G384400.1	Wheat	plasma membrane	65.71	65.53
TraesCS7A01G482200.1	Wheat	plasma membrane	65.71	65.53
AT1G79450.1	Thale cress	plasma membrane	65.14	65.14
AT1G16360.2	Thale cress	plastid	64.86	64.86
CDX81761	Canola	plastid	64.57	64.57
CDY51005	Canola	plastid	64.57	64.57
HORVU6Hr1G031530.3	Barley	plastid	64.57	64.2
Solyc02g036440.2.1	Tomato	plasma membrane	62.29	63.37
Os06t0665000-01	Rice	plasma membrane	64.57	63.13
CDX67738	Canola	endoplasmic reticulum, extracellular, peroxisome	33.14	62.37
HORVU0Hr1G022300.1	Barley	endoplasmic reticulum	66.29	58.44
Solyc08g023460.2.1	Tomato	plasma membrane	56.57	57.89
VIT_19s0085g00850.t01	Wine grape	plastid	68.57	56.74
PGSC0003DMT400060190	Potato	plasma membrane	90.86	53.36
Zm00001d046948_P004	Maize	plasma membrane	62.86	52.38
CDY00796	Canola	plastid	70.0	38.64
CDX73805	Canola	plastid	69.71	38.3
Bra026722.1-P	Field mustard	cytosol, golgi, plasma membrane	63.43	32.6

Protein Annotations

EnsemblPlants:Solyc05g054800.1.1	EnsemblPlantsGene:Solyc05g054800.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:CDC50/LEM3_fam
PANTHER:PTHR10926	PANTHER:PTHR10926:SF45	PFAM:PF03381	PIRSF:PIRSF015840	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002766CC0	UniProt:K4C2F7	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:	:

Description

No Description!

Coordinates

chr5:-:64625496..64626548

Molecular Weight (calculated)

39583.3 Da

IEP (calculated)

9.644

GRAVY (calculated)

-0.369

Length

350 amino acids

Sequence
(BLAST)

001: MNPSSSTTGG AGSDDNTSIR RNSNRPKYSR FTQQELPACK PILTPKWVIS VFLLVGIVFI PIGVVSLLAS RDVVEIVDRY DSECVPSNMT NDKIRFITND
101: SFDKTCIRTL TVPKKMKQPI YIYYQLENYY QNHRRYVKSR SDQQLKSASR RDDTGTCDPE DRVNGLPIVP CGLIAWSLFN DTYNFSIVNN INKRLDVNKN
201: GIAWKSDRDH KFGKDVFPSN FQNGTLIGGG KLTNESLDKQ ENLIVWMRTA ALPTFRKLYG KIEVDLEAGE RLNVTVLNNY NTYSFDGKKK LVLSTTSWIG
301: GKNDFLGIAY LTVGGLCFFL AMAFTIVYLV KPRQLGDPTY LSWNRNPGGN

Best Arabidopsis Sequence Match ( AT3G12740.1 )
(BLAST)

001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR

Arabidopsis Description

ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.