Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79320 | Canola | plasma membrane | 88.0 | 90.32 |
| CDX67994 | Canola | plasma membrane | 87.14 | 89.18 |
| Bra003610.1-P | Field mustard | plasma membrane | 86.86 | 88.89 |
| AT1G16360.2 | Thale cress | plastid | 83.43 | 83.43 |
| AT1G54320.1 | Thale cress | plastid | 74.29 | 74.5 |
| AT3G12740.1 | Thale cress | plastid | 72.86 | 72.86 |
| KRH44838 | Soybean | plasma membrane, plastid | 68.86 | 70.06 |
| KRH13042 | Soybean | plasma membrane | 68.86 | 70.06 |
| KRH13775 | Soybean | plasma membrane, plastid | 68.29 | 69.48 |
| KRH43674 | Soybean | plasma membrane, plastid | 68.0 | 69.19 |
| GSMUA_Achr6P20180_001 | Banana | plastid | 68.57 | 68.38 |
| GSMUA_Achr11P... | Banana | plasma membrane, plastid | 65.43 | 65.24 |
| TraesCS7B01G384400.1 | Wheat | plasma membrane | 65.43 | 65.24 |
| Solyc05g054800.1.1 | Tomato | nucleus | 65.14 | 65.14 |
| TraesCS7A01G482200.1 | Wheat | plasma membrane | 65.14 | 64.96 |
| TraesCS7D01G469100.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 65.14 | 64.59 |
| Os02t0173800-01 | Rice | plasma membrane | 64.0 | 64.0 |
| TraesCS6D01G145600.2 | Wheat | plasma membrane, plastid | 63.43 | 63.79 |
| TraesCS6A01G155600.1 | Wheat | plasma membrane, plastid | 63.14 | 63.51 |
| TraesCS6B01G183800.1 | Wheat | plasma membrane, plastid | 63.14 | 63.51 |
| Zm00001d015401_P001 | Maize | plastid | 63.14 | 63.32 |
| Zm00001d036654_P002 | Maize | endoplasmic reticulum, golgi, plasma membrane, plastid | 62.86 | 63.04 |
| EER88783 | Sorghum | plasma membrane, plastid | 63.14 | 62.78 |
| Zm00001d053778_P001 | Maize | plasma membrane | 62.57 | 62.75 |
| EES06351 | Sorghum | plastid | 62.0 | 62.18 |
| Os06t0665000-01 | Rice | plasma membrane | 63.14 | 61.73 |
| HORVU6Hr1G031530.3 | Barley | plastid | 61.14 | 60.8 |
| HORVU0Hr1G022300.1 | Barley | endoplasmic reticulum | 65.71 | 57.93 |
| VIT_19s0085g00850.t01 | Wine grape | plastid | 69.71 | 57.68 |
| AT5G46150.1 | Thale cress | golgi, peroxisome, plasma membrane | 52.57 | 53.64 |
| Zm00001d046948_P004 | Maize | plasma membrane | 60.0 | 50.0 |
| PGSC0003DMT400060190 | Potato | plasma membrane | 66.86 | 39.26 |
Protein Annotations
| MapMan:24.1.2.4.1.2 | MapMan:5.8.2.1.1.2 | EntrezGene:844283 | UniProt:A0A178WMM5 | ProteinID:AAD30230.1 | ProteinID:AEE36244.1 |
| ProteinID:AEE36245.1 | Symbol:ALIS5 | ArrayExpress:AT1G79450 | EnsemblPlantsGene:AT1G79450 | RefSeq:AT1G79450 | TAIR:AT1G79450 |
| RefSeq:AT1G79450-TAIR-G | EnsemblPlants:AT1G79450.1 | TAIR:AT1G79450.1 | EMBL:AY088777 | Unigene:At.34111 | EMBL:BX816946 |
| InterPro:CDC50/LEM3_fam | GO:GO:0000139 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031902 | RefSeq:NP_565210.1 | RefSeq:NP_974175.1 | ProteinID:OAP19530.1 |
| PFAM:PF03381 | PIRSF:PIRSF015840 | PO:PO:0000013 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR10926 | PANTHER:PTHR10926:SF45 | UniProt:Q8L8W0 | TMHMM:TMhelix | UniParc:UPI00000A4825 |
| SEG:seg | : | : | : | : | : |
Description
ALIS5ALA-interacting subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8W0]
Coordinates
chr1:+:29887616..29890211
Molecular Weight (calculated)
38910.8 Da
IEP (calculated)
9.806
GRAVY (calculated)
-0.228
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTAASSTV GGGGSSEISG VKKTSKRPKY SRFTQQELPA CKPILTPRWV ILTFLVAGVV FIPLGVICLF ASQGVVEIVD RYDTDCIPTS SRNNMVAYIQ
101: GEGDKICKRT ITVTKAMKHP VYVYYQLENF YQNHRRYVKS RNDAQLRSPK EEHDVKTCAP EDNVGGEPIV PCGLVAWSLF NDTYSFSRNS QQLLVNKKGI
201: SWKSDRENKF GKNVFPKNFQ KGAPIGGGTL NISKPLSEQE DLIVWMRTAA LPTFRKLYGK IETDLHAGDT ITVLLQNNYN TYSFNGQKKL VLSTTSWLGG
301: RNDFLGIAYL TVGSICLFLA VTFAVLYLVK PRQLGDPSYL SWNRSAGGLQ
101: GEGDKICKRT ITVTKAMKHP VYVYYQLENF YQNHRRYVKS RNDAQLRSPK EEHDVKTCAP EDNVGGEPIV PCGLVAWSLF NDTYSFSRNS QQLLVNKKGI
201: SWKSDRENKF GKNVFPKNFQ KGAPIGGGTL NISKPLSEQE DLIVWMRTAA LPTFRKLYGK IETDLHAGDT ITVLLQNNYN TYSFNGQKKL VLSTTSWLGG
301: RNDFLGIAYL TVGSICLFLA VTFAVLYLVK PRQLGDPSYL SWNRSAGGLQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.