CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 5
plasma membrane 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54320.1	KRH03466	AT3G47620.1	21798944
AT1G54320.1	KRH54542	AT3G47620.1	21798944
AT1G54320.1	KRH56919	AT3G47620.1	21798944
AT1G54320.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44838	Soybean	plasma membrane, plastid	93.6	93.6
KRH13775	Soybean	plasma membrane, plastid	81.1	81.1
KRH43674	Soybean	plasma membrane, plastid	79.65	79.65
CDY42411	Canola	plastid	74.42	73.78
CDY10503	Canola	plastid	74.13	73.49
AT1G54320.1	Thale cress	plastid	74.42	73.35
GSMUA_Achr6P20180_001	Banana	plastid	73.84	72.36
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	71.8	70.98
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	71.8	70.98
GSMUA_Achr11P...	Banana	plasma membrane, plastid	72.38	70.94
TraesCS6A01G155600.1	Wheat	plasma membrane, plastid	71.51	70.69
Bra030808.1-P	Field mustard	plastid	73.84	70.36
AT3G12740.1	Thale cress	plastid	71.51	70.29
CDY08407	Canola	plasma membrane, plastid	70.06	70.26
Solyc05g054800.1.1	Tomato	nucleus	71.22	70.0
Bra034736.1-P	Field mustard	plasma membrane, plastid	69.77	69.97
CDY42174	Canola	plastid	70.93	69.71
CDX79320	Canola	plasma membrane	68.9	69.5
Os02t0173800-01	Rice	plasma membrane	70.64	69.43
Bra001467.1-P	Field mustard	plastid	70.06	69.05
AT1G79450.1	Thale cress	plasma membrane	70.06	68.86
EER88783	Sorghum	plasma membrane, plastid	70.06	68.47
CDX67994	Canola	plasma membrane	68.02	68.42
Bra003610.1-P	Field mustard	plasma membrane	67.73	68.13
TraesCS7A01G482200.1	Wheat	plasma membrane	69.48	68.09
TraesCS7B01G384400.1	Wheat	plasma membrane	69.48	68.09
TraesCS7D01G469100.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane, plastid	69.77	67.99
HORVU6Hr1G031530.3	Barley	plastid	69.19	67.61
Zm00001d036654_P002	Maize	endoplasmic reticulum, golgi, plasma membrane, plastid	68.31	67.34
Zm00001d015401_P001	Maize	plastid	68.31	67.34
Zm00001d053778_P001	Maize	plasma membrane	67.73	66.76
CDX81761	Canola	plastid	67.73	66.57
CDY51005	Canola	plastid	67.73	66.57
AT1G16360.2	Thale cress	plastid	67.73	66.57
EES06351	Sorghum	plastid	67.15	66.19
Os06t0665000-01	Rice	plasma membrane	68.31	65.64
CDX67738	Canola	endoplasmic reticulum, extracellular, peroxisome	34.88	64.52
HORVU0Hr1G022300.1	Barley	endoplasmic reticulum	70.64	61.21
KRH09908	Soybean	plasma membrane	60.76	60.76
VIT_19s0085g00850.t01	Wine grape	plastid	74.42	60.52
KRG94866	Soybean	plasma membrane	59.01	58.17
KRH37801	Soybean	endoplasmic reticulum, golgi, plasma membrane, plastid	58.14	57.47
KRH12833	Soybean	cytosol	39.83	53.94
Zm00001d046948_P004	Maize	plasma membrane	65.41	53.57
KRH23423	Soybean	plasma membrane	56.1	50.66
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	49.42	48.02
PGSC0003DMT400060190	Potato	plasma membrane	71.8	41.44
CDY00796	Canola	plastid	70.64	38.33
CDX73805	Canola	plastid	70.06	37.83
KRH12834	Soybean	plasma membrane	10.47	36.0
Bra026722.1-P	Field mustard	cytosol, golgi, plasma membrane	65.99	33.33

Protein Annotations

EntrezGene:100791515	MapMan:24.1.2.4.1.2	MapMan:5.8.2.1.1.2	EMBL:ACUP02009525	InterPro:CDC50/LEM3_fam	EnsemblPlantsGene:GLYMA_15G212400
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	UniProt:I1MI68	ProteinID:KRH13041.1	EnsemblPlants:KRH13042
ProteinID:KRH13042	ProteinID:KRH13042.1	PFAM:PF03381	PIRSF:PIRSF015840	PANTHER:PTHR10926	PANTHER:PTHR10926:SF45
TMHMM:TMhelix	UniParc:UPI000233B470	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:33105925..33111396

Molecular Weight (calculated)

38494.8 Da

IEP (calculated)

9.799

GRAVY (calculated)

-0.392

Length

344 amino acids

Sequence
(BLAST)

001: MSTSNAGGAG SNDSNATRRQ SKRPKYSKFT QQELPACKPI LTPRAVISAF LIVTIVFIPI GVASLIASHD VVEIIDRYDL RCIPSNVTDK VAYIQTPGEK
101: QCNRQLTVDK RMKSPIYVYY QLDNFYQNHR RYVKSRNDEQ LRDSGKANSV SGCEPENNAN GKAILPCGLI AWSLFNDTYS FSRNSKNLTV NKKDISWKSD
201: RDHKFGSDVF PKNFQNGSII GGGSLNESIP LSEQEDLIVW MRTAALPTFR KLYGKIEVDL EKGDVINVNL HNNYNTYSFN GKKKLVLSTT SFLGGKNDFL
301: GIAYLTVGGL SFFLSMAFTI VYLVKPRQLG DPSYLSWNRN PGGH

Best Arabidopsis Sequence Match ( AT1G54320.1 )
(BLAST)

001: MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR

Arabidopsis Description

ALIS3ALA-interacting subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.