Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG94866 | Soybean | plasma membrane | 81.36 | 82.52 |
| VIT_00s2279g00010.t01 | Wine grape | cytosol | 39.27 | 58.16 |
| KRH09908 | Soybean | plasma membrane | 55.93 | 57.56 |
| VIT_00s1667g00010.t01 | Wine grape | plasma membrane | 49.72 | 57.14 |
| Solyc02g036440.2.1 | Tomato | plasma membrane | 50.85 | 52.33 |
| PGSC0003DMT400055262 | Potato | plasma membrane | 50.56 | 52.03 |
| GSMUA_Achr2P11380_001 | Banana | plasma membrane | 49.72 | 51.01 |
| GSMUA_Achr4P29460_001 | Banana | plasma membrane | 50.0 | 50.86 |
| TraesCS1B01G364300.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 48.59 | 50.59 |
| Zm00001d038750_P006 | Maize | plasma membrane | 48.31 | 50.44 |
| TraesCS1D01G352700.1 | Wheat | plasma membrane | 48.31 | 50.29 |
| EES19858 | Sorghum | plasma membrane | 48.59 | 50.29 |
| Os05t0529900-00 | Rice | plasma membrane | 48.31 | 49.71 |
| KRH13042 | Soybean | plasma membrane | 48.02 | 49.42 |
| TraesCS1A01G350000.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 48.31 | 49.0 |
| KRH13775 | Soybean | plasma membrane, plastid | 47.46 | 48.84 |
| KRH23423 | Soybean | plasma membrane | 52.54 | 48.82 |
| KRH43674 | Soybean | plasma membrane, plastid | 47.18 | 48.55 |
| Zm00001d027401_P001 | Maize | plasma membrane | 46.61 | 48.53 |
| Os03t0120100-01 | Rice | plasma membrane | 46.33 | 48.24 |
| KXG40321 | Sorghum | plasma membrane | 45.76 | 47.93 |
| TraesCS4D01G345100.1 | Wheat | plasma membrane | 44.63 | 47.45 |
| KRH44838 | Soybean | plasma membrane, plastid | 46.05 | 47.38 |
| TraesCS5A01G519200.1 | Wheat | plasma membrane | 44.63 | 47.16 |
| TraesCS4B01G350400.1 | Wheat | plasma membrane | 44.07 | 46.85 |
| HORVU5Hr1G020720.6 | Barley | cytosol | 29.66 | 45.45 |
| VIT_16s0115g00160.t01 | Wine grape | cytosol | 26.84 | 44.81 |
| KRH37801 | Soybean | endoplasmic reticulum, golgi, plasma membrane, plastid | 43.5 | 44.25 |
| KRH12833 | Soybean | cytosol | 31.07 | 43.31 |
| HORVU4Hr1G085300.1 | Barley | golgi | 15.54 | 42.97 |
| HORVU1Hr1G081400.10 | Barley | cytosol, endoplasmic reticulum | 35.88 | 36.6 |
| HORVU6Hr1G093390.1 | Barley | cytosol, endoplasmic reticulum | 31.64 | 30.6 |
| KRH12834 | Soybean | plasma membrane | 8.47 | 30.0 |
Protein Annotations
| EMBL:ACUP02009856 | EnsemblPlants:KRH06673 | EnsemblPlantsGene:GLYMA_16G038700 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:CDC50/LEM3_fam | PANTHER:PTHR10926 | PANTHER:PTHR10926:SF28 | PFAM:PF03381 | PIRSF:PIRSF015840 | ProteinID:KRH06673 |
| ProteinID:KRH06673.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0006EE0000 | UniProt:A0A0R0FL09 | MapMan:5.8.2.1.1.2 |
| MapMan:24.1.2.4.1.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr16:+:3645973..3649273
Molecular Weight (calculated)
40050.1 Da
IEP (calculated)
9.439
GRAVY (calculated)
-0.274
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVEPPSNSV AVADGRSKNA MKPKYSRFSQ QELHAWQPIL TPSWAISIFT VIELIFILVG LASYLVMQVV EVPFRYDDEC LPPDHKNDAV AYIKDFGSNK
101: TCTMKLTVKN ELKAPVYVYY QLKNFYQNHR RYVKSRDDRQ LRSKASENDV GTCSPEDYTP NDKGHKPIVP CGLIAWSLFN DTYKLSSNNK DLMINKKNIA
201: WTSDQKGNLG PKNFQAGGLI GGARLNQSLP FLVFEYLYTK SENNILFLLS KSALPTFKKL YGKIETGNIE VNDEVMLVIE NNYNTYEFGG RKSFVLSTTT
301: RVDGRNHFLG MTYILVGGIS LLFAAAFLLL YVMQTRSLGD ASYLSWNKNP GSLR
101: TCTMKLTVKN ELKAPVYVYY QLKNFYQNHR RYVKSRDDRQ LRSKASENDV GTCSPEDYTP NDKGHKPIVP CGLIAWSLFN DTYKLSSNNK DLMINKKNIA
201: WTSDQKGNLG PKNFQAGGLI GGARLNQSLP FLVFEYLYTK SENNILFLLS KSALPTFKKL YGKIETGNIE VNDEVMLVIE NNYNTYEFGG RKSFVLSTTT
301: RVDGRNHFLG MTYILVGGIS LLFAAAFLLL YVMQTRSLGD ASYLSWNKNP GSLR
001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
Arabidopsis Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.