Factsheet for TraesCS1A01G350000.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

golgi 1
mitochondrion 1
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	endoplasmic reticulum, golgi, plasma membrane
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G352700.1	Wheat	plasma membrane	96.28	98.82
TraesCS1B01G364300.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	94.84	97.35
EES19858	Sorghum	plasma membrane	76.79	78.36
Zm00001d038750_P006	Maize	plasma membrane	74.21	76.4
Os05t0529900-00	Rice	plasma membrane	74.21	75.29
TraesCS5A01G519200.1	Wheat	plasma membrane	65.33	68.06
GSMUA_Achr2P11380_001	Banana	plasma membrane	64.18	64.93
GSMUA_Achr4P29460_001	Banana	plasma membrane	64.18	64.37
HORVU1Hr1G081400.10	Barley	cytosol, endoplasmic reticulum	63.61	63.98
VIT_00s1667g00010.t01	Wine grape	plasma membrane	56.16	63.64
VIT_00s2279g00010.t01	Wine grape	cytosol	43.55	63.6
TraesCS6A01G155600.1	Wheat	plasma membrane, plastid	59.6	59.77
PGSC0003DMT400055262	Potato	plasma membrane	58.45	59.3
Solyc02g036440.2.1	Tomato	plasma membrane	57.88	58.72
TraesCS7A01G482200.1	Wheat	plasma membrane	58.45	58.12
KRG94866	Soybean	plasma membrane	57.88	57.88
KRH09908	Soybean	plasma membrane	56.16	56.98
TraesCS5A01G423800.1	Wheat	plasma membrane	49.86	50.58
HORVU6Hr1G093390.1	Barley	cytosol, endoplasmic reticulum	51.58	49.18
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	49.0	48.31
KRH23423	Soybean	plasma membrane	52.72	48.29
TraesCS5A01G380500.1	Wheat	plasma membrane	47.28	45.96
VIT_16s0115g00160.t01	Wine grape	cytosol	27.51	45.28

Protein Annotations

EnsemblPlants:TraesCS1A01G350000.1	EnsemblPlantsGene:TraesCS1A01G350000	GO:GO:0005575	GO:GO:0016020	InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926
PANTHER:PTHR10926:SF26	PFAM:PF03381	PIRSF:PIRSF015840	SEG:seg	TMHMM:TMhelix	MapMan:5.8.2.1.1.2
MapMan:24.1.2.4.1.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:534940876..534943193

Molecular Weight (calculated)

38252.8 Da

IEP (calculated)

8.429

GRAVY (calculated)

-0.093

Length

349 amino acids

Sequence
(BLAST)

001: MSVSGSESAA SANKPKYSKF TQQELPACKP LLTPGIVIGA FSLIGIIFVP IGLASLSASQ EIVELVDRYD EECVTASDKI GFIQDSEANK ACTRKITKTT
101: WHLCVQVPKP MKGPIHVYYQ LENFYQNHRR YVQSRSDQQL RDKDYKDPKA VAKACDPEAT TGDGSLIVPC GLIAWSLFND TYAFSVNKKS VTVNKKDIAW
201: ASDKNSKFGS NVFPVNFQKG GLIGGGNLND KLPLSEQEDL IVWMRTAALP TFRKLYGRIE ADIMASDEIT VVIQNNYNTY SFGGTKAVVL STASWIGGKN
301: NFIGVAYVAV GGICLLLAMG FVVLYVVKPR ALGDPAYLSW NKEAAEYSH

Best Arabidopsis Sequence Match ( AT1G16360.1 )
(BLAST)

001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR

Arabidopsis Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.