Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19858 | Sorghum | plasma membrane | 92.04 | 91.23 |
| TraesCS1B01G364300.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 76.7 | 76.47 |
| TraesCS1D01G352700.1 | Wheat | plasma membrane | 76.4 | 76.18 |
| Os05t0529900-00 | Rice | plasma membrane | 76.11 | 75.0 |
| TraesCS1A01G350000.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 76.4 | 74.21 |
| Zm00001d027401_P001 | Maize | plasma membrane | 73.45 | 73.24 |
| GSMUA_Achr4P29460_001 | Banana | plasma membrane | 69.62 | 67.82 |
| GSMUA_Achr2P11380_001 | Banana | plasma membrane | 68.44 | 67.25 |
| VIT_00s2279g00010.t01 | Wine grape | cytosol | 46.02 | 65.27 |
| VIT_00s1667g00010.t01 | Wine grape | plasma membrane | 58.41 | 64.29 |
| KRH09908 | Soybean | plasma membrane | 62.54 | 61.63 |
| Zm00001d015401_P001 | Maize | plastid | 63.13 | 61.32 |
| Zm00001d053778_P001 | Maize | plasma membrane | 62.54 | 60.74 |
| Zm00001d036654_P002 | Maize | endoplasmic reticulum, golgi, plasma membrane, plastid | 61.95 | 60.17 |
| KRG94866 | Soybean | plasma membrane | 60.47 | 58.74 |
| Solyc02g036440.2.1 | Tomato | plasma membrane | 59.0 | 58.14 |
| PGSC0003DMT400055262 | Potato | plasma membrane | 59.0 | 58.14 |
| HORVU1Hr1G081400.10 | Barley | cytosol, endoplasmic reticulum | 54.57 | 53.31 |
| KRH23423 | Soybean | plasma membrane | 57.23 | 50.92 |
| Zm00001d034351_P001 | Maize | plasma membrane | 51.62 | 50.72 |
| VIT_16s0115g00160.t01 | Wine grape | cytosol | 31.56 | 50.47 |
| KRH06673 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 50.44 | 48.31 |
| Zm00001d021371_P001 | Maize | plasma membrane | 53.39 | 47.01 |
| Zm00001d046948_P004 | Maize | plasma membrane | 57.82 | 46.67 |
| HORVU6Hr1G093390.1 | Barley | cytosol, endoplasmic reticulum | 47.49 | 43.99 |
Protein Annotations
| EMBL:BT083475 | EnsemblPlants:Zm00001d038750_P006 | EnsemblPlants:Zm00001d038750_T006 | EnsemblPlantsGene:Zm00001d038750 | EntrezGene:100384483 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CDC50/LEM3_fam | PANTHER:PTHR10926 | PANTHER:PTHR10926:SF28 | PFAM:PF03381 |
| PIRSF:PIRSF015840 | ProteinID:AQK87715.1 | ProteinID:AQK87716.1 | ProteinID:AQK87717.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0001A4C78B | UniProt:C4IY28 | MapMan:5.8.2.1.1.2 | MapMan:24.1.2.4.1.2 | : | : |
Description
ALA-interacting subunit 1
Coordinates
chr6:+:163852617..163854764
Molecular Weight (calculated)
37535.0 Da
IEP (calculated)
9.048
GRAVY (calculated)
-0.217
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSESDSLAS RRSKKPKYSK FTQQELPACK PMLTPGIVIG AFSLIGVFFV PIGLASLSAS HNIVEVIDRY DAECVSANDK VGFIQDTKTD KACTRKITVP
101: KPMKGPIHIY YQLENFYQNH RRYVKSRNDM QLRNKGDAST IANCEPEATS EDGGKPIVPC GLIAWSLFND TYSFSLNSKA VQVNKKNIAW DSDKIKKFGS
201: DVYPSNFQKG GLIGGAKLDE KIPLSEQEDL IVWMRTAALP TFRKLYGRIE ADAMASDEIT VVIQNNYNTY SFGGTKALVL STTSWIGGRN NFIGVAYVAI
301: GGVCLFLALA FVILYVIKPR ALGDPSYLSW NRENPDHPN
101: KPMKGPIHIY YQLENFYQNH RRYVKSRNDM QLRNKGDAST IANCEPEATS EDGGKPIVPC GLIAWSLFND TYSFSLNSKA VQVNKKNIAW DSDKIKKFGS
201: DVYPSNFQKG GLIGGAKLDE KIPLSEQEDL IVWMRTAALP TFRKLYGRIE ADAMASDEIT VVIQNNYNTY SFGGTKALVL STTSWIGGRN NFIGVAYVAI
301: GGVCLFLALA FVILYVIKPR ALGDPSYLSW NRENPDHPN
001: MSFSATSSIA LGGGSAEASA AKNTSKRPKY SRFTQQELPA CKPILTPKWV ILTFLVSGVV FIPLGVICLF ASQGVIEIVD RYDTDCIPLS SRDNKVRYIQ
101: GLEDKRCNRT ITVTKTMKNP VYVYYQLENY YQNHRRYVKS RQDGQLRSPK DEHETKSCAP EDTLGGQPIV PCGLVAWSLF NDTYDFTRNN QKLPVNKKDI
201: SWKSDRESKF GKNVFPKNFQ KGSLIGGKSL DQDIPLSEQE DLIVWMRTAA LPTFRKLYGK IDTDLQAGDT IKVLLQNNYN TYSFNGKKKL VLSTTSWLGG
301: RNDFLGIAYL TVGSICLFLA VSFSVLYLAK PRQLGDPSYL SWNRSAGGGR
101: GLEDKRCNRT ITVTKTMKNP VYVYYQLENY YQNHRRYVKS RQDGQLRSPK DEHETKSCAP EDTLGGQPIV PCGLVAWSLF NDTYDFTRNN QKLPVNKKDI
201: SWKSDRESKF GKNVFPKNFQ KGSLIGGKSL DQDIPLSEQE DLIVWMRTAA LPTFRKLYGK IDTDLQAGDT IKVLLQNNYN TYSFNGKKKL VLSTTSWLGG
301: RNDFLGIAYL TVGSICLFLA VSFSVLYLAK PRQLGDPSYL SWNRSAGGGR
Arabidopsis Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.