CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 3
golgi 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	82.52	81.36
VIT_00s2279g00010.t01	Wine grape	cytosol	47.56	69.46
VIT_00s1667g00010.t01	Wine grape	plasma membrane	60.17	68.18
KRH09908	Soybean	plasma membrane	66.76	67.73
HORVU4Hr1G085300.1	Barley	golgi	22.64	61.72
GSMUA_Achr4P29460_001	Banana	plasma membrane	61.03	61.21
EES19858	Sorghum	plasma membrane	59.6	60.82
Solyc02g036440.2.1	Tomato	plasma membrane	59.89	60.76
GSMUA_Achr2P11380_001	Banana	plasma membrane	59.89	60.58
Zm00001d038750_P006	Maize	plasma membrane	58.74	60.47
PGSC0003DMT400055262	Potato	plasma membrane	59.31	60.17
TraesCS1B01G364300.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	58.17	59.71
TraesCS1D01G352700.1	Wheat	plasma membrane	57.88	59.41
Os03t0120100-01	Rice	plasma membrane	57.88	59.41
KRH13042	Soybean	plasma membrane	58.17	59.01
HORVU5Hr1G020720.6	Barley	cytosol	38.97	58.87
TraesCS4D01G345100.1	Wheat	plasma membrane	56.16	58.86
Os05t0529900-00	Rice	plasma membrane	57.88	58.72
TraesCS5A01G519200.1	Wheat	plasma membrane	56.16	58.51
TraesCS4B01G350400.1	Wheat	plasma membrane	55.59	58.26
Zm00001d027401_P001	Maize	plasma membrane	56.45	57.94
TraesCS1A01G350000.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	57.88	57.88
KRH13775	Soybean	plasma membrane, plastid	57.02	57.85
KXG40321	Sorghum	plasma membrane	55.87	57.69
KRH43674	Soybean	plasma membrane, plastid	56.45	57.27
KRH44838	Soybean	plasma membrane, plastid	55.59	56.4
KRH23423	Soybean	plasma membrane	61.32	56.17
KRH37801	Soybean	endoplasmic reticulum, golgi, plasma membrane, plastid	53.01	53.16
VIT_16s0115g00160.t01	Wine grape	cytosol	29.23	48.11
KRH12833	Soybean	cytosol	34.67	47.64
HORVU1Hr1G081400.10	Barley	cytosol, endoplasmic reticulum	41.55	41.79
KRH12834	Soybean	plasma membrane	10.03	35.0
HORVU6Hr1G093390.1	Barley	cytosol, endoplasmic reticulum	35.82	34.15

Protein Annotations

EMBL:ACUP02012050	EnsemblPlants:KRG94866	EnsemblPlantsGene:GLYMA_19G114100	EntrezGene:100779539	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926	PANTHER:PTHR10926:SF28	PFAM:PF03381	PIRSF:PIRSF015840
ProteinID:KRG94866	ProteinID:KRG94866.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000233E8A3	UniProt:I1N8A7
MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:36886152..36889609

Molecular Weight (calculated)

39093.7 Da

IEP (calculated)

8.928

GRAVY (calculated)

-0.283

Length

349 amino acids

Sequence
(BLAST)

001: MSVENSSTSV SVAEGQSKNA MKPKYSRFSQ QELHAWQPIL TPSWAISIFT VIGLIFIPVG LASLFASESV VEVPFRYDDE CLPPDHKNDA VAYIKDVGSN
101: KTCTKKLTVK NKMKAPVYVY YQLDNFYQNH RRYVKSRDDK QLRSKAAEND VGSCSPEDYT PNDMGHKPIV PCGLIAWSLF NDTYKLTSNN KDLVINKKNI
201: AWKSDQNGKF GSDVYPKNFQ AGGLIGGARL NESLPLSEQE DLIVWMRTAA LPTFRKLYGK IETDIEVNDV VLVIENNYNT YEFGGRKSIV LSTTTWVGGR
301: NNFLGMAYIL IGGISLLLAA AFLLLYVMQP RPLGDPSYLS WNKNPGSLR

Best Arabidopsis Sequence Match ( AT1G16360.1 )
(BLAST)

001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR

Arabidopsis Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.