Factsheet for HORVU5Hr1G020720.6

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G085300.1	Barley	golgi	44.59	80.47
TraesCS4D01G345100.1	Wheat	plasma membrane	83.98	58.26
TraesCS4B01G350400.1	Wheat	plasma membrane	83.12	57.66
TraesCS5A01G519200.1	Wheat	plasma membrane	83.55	57.61
VIT_00s2279g00010.t01	Wine grape	cytosol	56.71	54.81
Os03t0120100-01	Rice	plasma membrane	74.46	50.59
KXG40321	Sorghum	plasma membrane	71.43	48.82
Zm00001d027401_P001	Maize	plasma membrane	71.43	48.53
VIT_00s1667g00010.t01	Wine grape	plasma membrane	60.17	45.13
GSMUA_Achr2P11380_001	Banana	plasma membrane	63.64	42.61
GSMUA_Achr4P29460_001	Banana	plasma membrane	63.2	41.95
KRG94866	Soybean	plasma membrane	58.87	38.97
KRH09908	Soybean	plasma membrane	56.71	38.08
HORVU6Hr1G031530.3	Barley	plastid	57.58	37.78
PGSC0003DMT400055262	Potato	plasma membrane	55.41	37.21
Solyc02g036440.2.1	Tomato	plasma membrane	54.55	36.63
HORVU0Hr1G022300.1	Barley	endoplasmic reticulum	61.04	35.52
KRH23423	Soybean	plasma membrane	54.55	33.07
HORVU5Hr1G103360.3	Barley	golgi	50.22	30.37
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	45.45	29.66
HORVU5Hr1G094000.6	Barley	plasma membrane, plastid	45.02	27.37
VIT_16s0115g00160.t01	Wine grape	cytosol	23.38	25.47
HORVU1Hr1G081400.10	Barley	cytosol, endoplasmic reticulum	36.8	24.5
HORVU6Hr1G093390.1	Barley	cytosol, endoplasmic reticulum	26.41	16.67

Protein Annotations

EnsemblPlants:HORVU5Hr1G020720.6	EnsemblPlantsGene:HORVU5Hr1G020720	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:CDC50/LEM3_fam
PANTHER:PTHR10926	PANTHER:PTHR10926:SF26	PFAM:PF03381	PIRSF:PIRSF015840	SEG:seg	TMHMM:TMhelix
UniParc:UPI000B479FFE	UniProt:A0A287QL00	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:	:

Description

No Description!

Coordinates

chrchr5H:-:96157232..96163624

Molecular Weight (calculated)

25864.3 Da

IEP (calculated)

9.639

GRAVY (calculated)

-0.154

Length

231 amino acids

Sequence
(BLAST)

001: MHSNNECAKI HEEPNPCLLP DRWLLSKPLK RYVRSRSDKQ LRYKSVVHLI SDCVPEGKTA DGAPIVPCGL VAWSLFNDTY TVRVNGVVTR VNKKDIAWKS
101: DKNNKFSNNI YPSNFQKGSL IGGAKLNESI PLSEQEDLIV WMRTAALPTF RKLYGRIEKD INANDNVTVV IQNNYNTYSF GGSKALVLST ASWIGGKNNF
201: IGIAYLTIGG LCLSLAMCFL VLYMIKRSIL D

Best Arabidopsis Sequence Match ( AT1G16360.1 )
(BLAST)

001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR

Arabidopsis Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.