Factsheet for VIT_00s1667g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 1
plasma membrane 5
extracellular 2
nucleus 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	extracellular, nucleus, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2279g00010.t01	Wine grape	cytosol	77.27	99.58
GSMUA_Achr4P29460_001	Banana	plasma membrane	73.38	64.94
VIT_16s0115g00160.t01	Wine grape	cytosol	44.48	64.62
GSMUA_Achr2P11380_001	Banana	plasma membrane	71.43	63.77
KRH09908	Soybean	plasma membrane	69.16	61.92
KXG40321	Sorghum	plasma membrane	67.21	61.24
Solyc02g036440.2.1	Tomato	plasma membrane	68.18	61.05
HORVU4Hr1G085300.1	Barley	golgi	25.32	60.94
Os03t0120100-01	Rice	plasma membrane	67.21	60.88
PGSC0003DMT400055262	Potato	plasma membrane	67.86	60.76
Zm00001d027401_P001	Maize	plasma membrane	66.56	60.29
HORVU5Hr1G020720.6	Barley	cytosol	45.13	60.17
KRG94866	Soybean	plasma membrane	68.18	60.17
TraesCS4D01G345100.1	Wheat	plasma membrane	64.61	59.76
TraesCS4B01G350400.1	Wheat	plasma membrane	64.29	59.46
TraesCS5A01G519200.1	Wheat	plasma membrane	64.29	59.1
Zm00001d038750_P006	Maize	plasma membrane	64.29	58.41
EES19858	Sorghum	plasma membrane	64.61	58.19
VIT_10s0003g03980.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	62.01	57.7
TraesCS1B01G364300.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	62.99	57.06
TraesCS1D01G352700.1	Wheat	plasma membrane	62.99	57.06
Os05t0529900-00	Rice	plasma membrane	63.31	56.69
TraesCS1A01G350000.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	63.64	56.16
VIT_19s0085g00850.t01	Wine grape	plastid	72.08	52.48
KRH23423	Soybean	plasma membrane	63.96	51.71
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	57.14	49.72
HORVU1Hr1G081400.10	Barley	cytosol, endoplasmic reticulum	45.78	40.63
HORVU6Hr1G093390.1	Barley	cytosol, endoplasmic reticulum	38.64	32.51

Protein Annotations

EntrezGene:100252226	wikigene:100252226	EntrezGene:100854990	wikigene:100854990	MapMan:24.1.2.4.1.2	MapMan:5.8.2.1.1.2
ProteinID:CCB48487	ProteinID:CCB48487.1	InterPro:CDC50/LEM3_fam	UniProt:F6H8E4	EMBL:FN595369	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100252226	wikigene:LOC100252226	EntrezGene:LOC100854990	wikigene:LOC100854990
PFAM:PF03381	PIRSF:PIRSF015840	PANTHER:PTHR10926	PANTHER:PTHR10926:SF28	TIGR:TC54964	TMHMM:TMhelix
UniParc:UPI0002107ED2	ArrayExpress:VIT_00s1667g00010	EnsemblPlantsGene:VIT_00s1667g00010	EnsemblPlants:VIT_00s1667g00010.t01	unigene:Vvi.11606	unigene:Vvi.315
RefSeq:XP_002263924	RefSeq:XP_002263924.2	SEG:seg	:	:	:

Description

ALA-interacting subunit [Source:UniProtKB/TrEMBL;Acc:F6H8E4]

Coordinates

chrUn:+:40080193..40083543

Molecular Weight (calculated)

34717.8 Da

IEP (calculated)

9.453

GRAVY (calculated)

-0.089

Length

308 amino acids

Sequence
(BLAST)

001: MTFHSRFTQQ ELPACKPILT PGWVISSFIF VGIIFIPIGL ASLFASERVV EIVHRYDTDC VPASYRNDML AYIQSNETNK TCTRTFLVPK QMKSPVYIYY
101: QLDNFYQNHR RYVKSRSDKQ LRSRASENDT SSCDPEDVTS NKSAIVPCGL IAWSLFNDTY GFSVNNTLLG VSKKNIAWKS DQQHKFGSDV YPKNFQSGGL
201: IGGAKLNSSI PLSQQVDLIV WMRTAALPTF RKLYGKIEVD LEANTELTVV IENNYNTYSF GGKKKLVLST TSWIGGKNDF LGIAYITLGG LSLFLAISFL
301: LIYIIKPR

Best Arabidopsis Sequence Match ( AT3G12740.1 )
(BLAST)

001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR

Arabidopsis Description

ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.