Factsheet for GSMUA_Achr4P29460_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
peroxisome 1
extracellular 2
plasma membrane 4
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	extracellular, nucleus, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P11380_001	Banana	plasma membrane	90.23	91.01
VIT_00s2279g00010.t01	Wine grape	cytosol	50.86	74.06
VIT_00s1667g00010.t01	Wine grape	plasma membrane	64.94	73.38
HORVU4Hr1G085300.1	Barley	golgi	26.15	71.09
Os03t0120100-01	Rice	plasma membrane	68.1	69.71
Zm00001d038750_P006	Maize	plasma membrane	67.82	69.62
EES19858	Sorghum	plasma membrane	68.1	69.3
TraesCS4D01G345100.1	Wheat	plasma membrane	64.94	67.87
Zm00001d027401_P001	Maize	plasma membrane	65.8	67.35
TraesCS4B01G350400.1	Wheat	plasma membrane	64.37	67.27
TraesCS5A01G519200.1	Wheat	plasma membrane	64.66	67.16
GSMUA_Achr6P20180_001	Banana	plastid	67.53	66.95
KXG40321	Sorghum	plasma membrane	64.37	66.27
TraesCS1B01G364300.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	64.37	65.88
TraesCS1D01G352700.1	Wheat	plasma membrane	64.37	65.88
GSMUA_Achr11P...	Banana	plasma membrane, plastid	65.23	64.67
KRH09908	Soybean	plasma membrane	63.79	64.53
TraesCS1A01G350000.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	64.37	64.18
Os05t0529900-00	Rice	plasma membrane	62.93	63.66
PGSC0003DMT400055262	Potato	plasma membrane	62.93	63.66
Solyc02g036440.2.1	Tomato	plasma membrane	62.64	63.37
HORVU5Hr1G020720.6	Barley	cytosol	41.95	63.2
KRG94866	Soybean	plasma membrane	61.21	61.03
VIT_16s0115g00160.t01	Wine grape	cytosol	35.92	58.96
GSMUA_Achr7P01140_001	Banana	plasma membrane	54.02	54.34
KRH23423	Soybean	plasma membrane	58.62	53.54
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	50.86	50.0
HORVU1Hr1G081400.10	Barley	cytosol, endoplasmic reticulum	45.98	46.11
HORVU6Hr1G093390.1	Barley	cytosol, endoplasmic reticulum	39.37	37.43

Protein Annotations

EnsemblPlants:GSMUA_Achr4P29460_001	EnsemblPlants:GSMUA_Achr4T29460_001	EnsemblPlantsGene:GSMUA_Achr4G29460_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:CDC50/LEM3_fam	ncoils:Coil	PANTHER:PTHR10926	PANTHER:PTHR10926:SF28	PFAM:PF03381	PIRSF:PIRSF015840
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002958005	UniProt:M0ST58	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2

Description

ALA-interacting subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G29460_001]

Coordinates

chr4:+:27410993..27414132

Molecular Weight (calculated)

38882.4 Da

IEP (calculated)

8.870

GRAVY (calculated)

-0.293

Length

348 amino acids

Sequence
(BLAST)

001: MNPRGDSTSG SDGAAEPRRK SKKPKYSRFT QQELPACKPL LTPAIVITAF AFIGIIFIPI GLLSLSASGQ VVEIVYQYDT DCIPEQLQND KVAFIQSSTT
101: NKTCTRTLTV PKNMEGPVHI YYELDNFYQN HRRYVKSRSD KQLRSKASET ETTNCAPEAT TSDGSVIVPC GLIAWSLFND TYSFAVNSKI IEVNKKNIAW
201: QSDKEHKFGS DVYPKNFQMG GLIGGAKLNA SIPLSEQEDL IVWMRTAALP RFRKLYGRIE TDLAANEQVT VTIQNNYNTY SFEGKKNLVL STTSWIGGKN
301: DFLGTAYLTI GSLCLFLAMG FIILYLLKPR TLGDPSYLSW NRNPDGHY

Best Arabidopsis Sequence Match ( AT3G12740.1 )
(BLAST)

001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR

Arabidopsis Description

ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.