Factsheet for Zm00001d027401_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

golgi 2
extracellular 1
plasma membrane 3
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40321	Sorghum	plasma membrane	87.94	88.46
Os03t0120100-01	Rice	plasma membrane	83.53	83.53
TraesCS4D01G345100.1	Wheat	plasma membrane	74.71	76.28
TraesCS5A01G519200.1	Wheat	plasma membrane	74.71	75.82
HORVU4Hr1G085300.1	Barley	golgi	28.53	75.78
TraesCS4B01G350400.1	Wheat	plasma membrane	74.12	75.68
Zm00001d038750_P006	Maize	plasma membrane	73.24	73.45
HORVU5Hr1G020720.6	Barley	cytosol	48.53	71.43
VIT_00s1667g00010.t01	Wine grape	plasma membrane	60.29	66.56
VIT_00s2279g00010.t01	Wine grape	cytosol	46.76	66.53
GSMUA_Achr4P29460_001	Banana	plasma membrane	67.35	65.8
GSMUA_Achr2P11380_001	Banana	plasma membrane	65.88	64.93
Zm00001d015401_P001	Maize	plastid	63.24	61.6
Zm00001d053778_P001	Maize	plasma membrane	62.94	61.32
Zm00001d036654_P002	Maize	endoplasmic reticulum, golgi, plasma membrane, plastid	61.76	60.17
KRH09908	Soybean	plasma membrane	59.12	58.43
PGSC0003DMT400055262	Potato	plasma membrane	58.82	58.14
Solyc02g036440.2.1	Tomato	plasma membrane	58.53	57.85
KRG94866	Soybean	plasma membrane	57.94	56.45
VIT_16s0115g00160.t01	Wine grape	cytosol	30.59	49.06
KRH23423	Soybean	plasma membrane	54.41	48.56
Zm00001d034351_P001	Maize	plasma membrane	48.53	47.83
Zm00001d046948_P004	Maize	plasma membrane	58.82	47.62
Zm00001d021371_P001	Maize	plasma membrane	52.94	46.75
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	48.53	46.61

Protein Annotations

EntrezGene:100193072	MapMan:24.1.2.4.1.2	MapMan:5.8.2.1.1.2	UniProt:A0A1D6JLQ8	InterPro:CDC50/LEM3_fam	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	ProteinID:ONL93044.1	ProteinID:ONL93046.1	ProteinID:ONL93047.1	ProteinID:ONL93049.1
ProteinID:ONL93051.1	PFAM:PF03381	PIRSF:PIRSF015840	PANTHER:PTHR10926	PANTHER:PTHR10926:SF26	TMHMM:TMhelix
UniParc:UPI0004DE7EEC	EnsemblPlantsGene:Zm00001d027401	EnsemblPlants:Zm00001d027401_P001	EnsemblPlants:Zm00001d027401_T001	SEG:seg	:

Description

ALA-interacting subunit 1

Coordinates

chr1:-:4417538..4425283

Molecular Weight (calculated)

38265.3 Da

IEP (calculated)

9.169

GRAVY (calculated)

-0.138

Length

340 amino acids

Sequence
(BLAST)

001: MLMDRLEMQD DSKRSNRPKY SKFTQQELPA CKPLLTPAIV ISAFLLVGIL FVPIGLASLS ASQEIVELVD RYDTSCVPVA DKVGFIQNTK TDKSCTRTLT
101: IPKHMKSPIQ IYYQIGDFYQ NHRRYVKSRS DKQLRYKDAA HLTKDCEPEV YSAGGAPIVP CGLVAWSLFN DTYTISVNKK AIVVNKKDIA WQSDKKKKFG
201: SDVYPSNFQN GNLIGGAKLN ESIPLSEQED LIVWMRTAAL PTFRKLYGRI ETDIMENDEL TVVIQNNYNT YSFGGSKALV LSTTSWIGGK NNFIGFAYLI
301: VGGFCLFLAL VFVVLYMIKP RTLGDTSFLS WNRGTMDYPS

Best Arabidopsis Sequence Match ( AT1G16360.1 )
(BLAST)

001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR

Arabidopsis Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.