Factsheet for GSMUA_Achr11P25620_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

nucleus 1
plasma membrane 3
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54320.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT1G54320.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT1G54320.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT1G54320.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P20180_001	Banana	plastid	82.91	82.91
KRH13775	Soybean	plasma membrane, plastid	73.5	75.0
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	74.36	75.0
Os02t0173800-01	Rice	plasma membrane	74.64	74.86
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	74.07	74.71
TraesCS6A01G155600.1	Wheat	plasma membrane, plastid	74.07	74.71
EER88783	Sorghum	plasma membrane, plastid	74.07	73.86
Zm00001d036654_P002	Maize	endoplasmic reticulum, golgi, plasma membrane, plastid	72.93	73.35
KRH43674	Soybean	plasma membrane, plastid	71.79	73.26
Zm00001d053778_P001	Maize	plasma membrane	72.65	73.07
EES06351	Sorghum	plastid	72.65	73.07
Zm00001d015401_P001	Maize	plastid	72.65	73.07
Solyc05g054800.1.1	Tomato	nucleus	72.65	72.86
KRH44838	Soybean	plasma membrane, plastid	70.94	72.38
KRH13042	Soybean	plasma membrane	70.94	72.38
Os06t0665000-01	Rice	plasma membrane	73.5	72.07
HORVU6Hr1G031530.3	Barley	plastid	71.79	71.59
TraesCS7D01G469100.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane, plastid	71.79	71.39
TraesCS7B01G384400.1	Wheat	plasma membrane	71.23	71.23
AT1G54320.1	Thale cress	plastid	70.66	71.06
TraesCS7A01G482200.1	Wheat	plasma membrane	70.94	70.94
CDY10503	Canola	plastid	70.09	70.89
CDY42411	Canola	plastid	69.8	70.61
AT3G12740.1	Thale cress	plastid	70.09	70.29
CDY08407	Canola	plasma membrane, plastid	66.95	68.51
Bra034736.1-P	Field mustard	plasma membrane, plastid	66.95	68.51
CDY42174	Canola	plastid	68.09	68.29
Bra001467.1-P	Field mustard	plastid	67.81	68.19
Bra030808.1-P	Field mustard	plastid	69.23	67.31
CDX79320	Canola	plasma membrane	65.24	67.16
AT1G16360.2	Thale cress	plastid	66.1	66.29
GSMUA_Achr2P11380_001	Banana	plasma membrane	64.96	66.09
CDX67994	Canola	plasma membrane	64.39	66.08
Bra003610.1-P	Field mustard	plasma membrane	64.1	65.79
CDX81761	Canola	plastid	65.24	65.43
AT1G79450.1	Thale cress	plasma membrane	65.24	65.43
CDY51005	Canola	plastid	65.24	65.43
GSMUA_Achr4P29460_001	Banana	plasma membrane	64.67	65.23
HORVU0Hr1G022300.1	Barley	endoplasmic reticulum	71.51	63.22
CDX67738	Canola	endoplasmic reticulum, extracellular, peroxisome	32.48	61.29
VIT_19s0085g00850.t01	Wine grape	plastid	71.79	59.57
Zm00001d046948_P004	Maize	plasma membrane	68.95	57.62
GSMUA_Achr7P01140_001	Banana	plasma membrane	56.7	57.51
PGSC0003DMT400060190	Potato	plasma membrane	73.5	43.29
CDY00796	Canola	plastid	68.66	38.01
CDX73805	Canola	plastid	67.81	37.36
Bra026722.1-P	Field mustard	cytosol, golgi, plasma membrane	63.82	32.89

Protein Annotations

EnsemblPlants:GSMUA_Achr11P25620_001	EnsemblPlants:GSMUA_Achr11T25620_001	EnsemblPlantsGene:GSMUA_Achr11G25620_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926	PANTHER:PTHR10926:SF30	PFAM:PF03381	PIRSF:PIRSF015840	SEG:seg
TMHMM:TMhelix	UniParc:UPI000295BEA3	UniProt:M0RVE2	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:

Description

ALA-interacting subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G25620_001]

Coordinates

chr11:+:24711276..24715203

Molecular Weight (calculated)

39085.6 Da

IEP (calculated)

9.770

GRAVY (calculated)

-0.408

Length

351 amino acids

Sequence
(BLAST)

001: MNSSSGSAAG PSSGSGDGSA PRRNSKRPKY SKFTQQELPA CKPILTPKWV ISVFTLVGVI FVPIGIAALM ASNNVVEIVD RYDTECIPAN MTGDKVAYIQ
101: NDDIIKTCTR NLTVPKDMDQ PIYVYYQLDN FYQNHRRYVK SRNDAQLKDA DQANKTSGCD PEKTTKDGSP IVPCGLIAWS LFNDTYNFTL GNKNLSVNKN
201: GISWKSDRDH KFGKDVFPKN FQNGILRGGA SLDSNKPLNK QEDLIVWMRT AALPTFRKLY GKIHQDLKAN DIIMVTLENN YNTYSFNGKK KLVLSTSSWL
301: GGKNDFLGIA YLTIGGLCFF LATAFTVVYL VKPRKLGDPS YLSWNRNPSG H

Best Arabidopsis Sequence Match ( AT3G12740.1 )
(BLAST)

001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR

Arabidopsis Description

ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.