Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018126.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G54320.1 | Bra018126.1-P | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42411 | Canola | plastid | 95.57 | 99.42 |
| CDY10503 | Canola | plastid | 93.63 | 97.41 |
| AT1G54320.1 | Thale cress | plastid | 87.81 | 90.83 |
| Bra001467.1-P | Field mustard | plastid | 82.55 | 85.39 |
| Bra034736.1-P | Field mustard | plasma membrane, plastid | 80.33 | 84.55 |
| KRH43674 | Soybean | plasma membrane, plastid | 71.47 | 75.0 |
| KRH13775 | Soybean | plasma membrane, plastid | 70.91 | 74.42 |
| KRH13042 | Soybean | plasma membrane | 70.36 | 73.84 |
| Bra003610.1-P | Field mustard | plasma membrane | 68.14 | 71.93 |
| KRH44838 | Soybean | plasma membrane, plastid | 68.14 | 71.51 |
| GSMUA_Achr6P20180_001 | Banana | plastid | 69.25 | 71.23 |
| GSMUA_Achr11P... | Banana | plasma membrane, plastid | 67.31 | 69.23 |
| Os02t0173800-01 | Rice | plasma membrane | 67.04 | 69.14 |
| Zm00001d015401_P001 | Maize | plastid | 66.76 | 69.05 |
| Solyc05g054800.1.1 | Tomato | nucleus | 66.2 | 68.29 |
| Zm00001d036654_P002 | Maize | endoplasmic reticulum, golgi, plasma membrane, plastid | 65.93 | 68.19 |
| TraesCS6D01G145600.2 | Wheat | plasma membrane, plastid | 65.65 | 68.1 |
| TraesCS6A01G155600.1 | Wheat | plasma membrane, plastid | 65.37 | 67.82 |
| TraesCS6B01G183800.1 | Wheat | plasma membrane, plastid | 65.37 | 67.82 |
| EES06351 | Sorghum | plastid | 65.37 | 67.62 |
| Zm00001d053778_P001 | Maize | plasma membrane | 65.37 | 67.62 |
| EER88783 | Sorghum | plasma membrane, plastid | 65.93 | 67.61 |
| TraesCS7A01G482200.1 | Wheat | plasma membrane | 65.65 | 67.52 |
| TraesCS7B01G384400.1 | Wheat | plasma membrane | 65.1 | 66.95 |
| Os06t0665000-01 | Rice | plasma membrane | 66.2 | 66.76 |
| TraesCS7D01G469100.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 64.82 | 66.29 |
| HORVU6Hr1G031530.3 | Barley | plastid | 62.6 | 64.2 |
| VIT_19s0085g00850.t01 | Wine grape | plastid | 71.19 | 60.76 |
| HORVU0Hr1G022300.1 | Barley | endoplasmic reticulum | 65.93 | 59.95 |
| Bra017577.1-P | Field mustard | plasma membrane | 51.8 | 54.68 |
| Zm00001d046948_P004 | Maize | plasma membrane | 62.05 | 53.33 |
| PGSC0003DMT400060190 | Potato | plasma membrane | 67.87 | 41.11 |
| Bra026722.1-P | Field mustard | cytosol, golgi, plasma membrane | 68.7 | 36.42 |
Protein Annotations
| EnsemblPlants:Bra030808.1 | EnsemblPlants:Bra030808.1-P | EnsemblPlantsGene:Bra030808 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:CDC50/LEM3_fam | PANTHER:PTHR10926 | PANTHER:PTHR10926:SF45 | PFAM:PF03381 | PIRSF:PIRSF015840 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0002546CBF | UniProt:M4EPT7 | MapMan:5.8.2.1.1.2 | MapMan:24.1.2.4.1.2 | : |
Description
AT1G54320 (E=1e-170) | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
Coordinates
chrA08:+:8219..10186
Molecular Weight (calculated)
40004.0 Da
IEP (calculated)
9.956
GRAVY (calculated)
-0.269
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSNTASSSA GSGDSSAARK NSKRPKCIDY SSALLSLTLL DSKFTQQELP ACKPILTPGW VISTFLIVSV IFIPLGVISL FASQDVVEIV DRYDNDCIPA
101: PARTNKVAFI QGAAPKSCNR TLTVTKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSP KFENQISACK PEDDAGGKPI VPCGLIAWSL FNGTYTLSRN
201: NTPLAVNKKG IAWKSDKEHK FGNKVFPKNF QKGNLTGGAT LNPDIPLSEQ EDLIVWMRTA ALPTFRKLYG KIETDLENGD TIQVTLQNNY NTYSFSGNKK
301: LVLSTTSWLG GKNDFLGIAY LTVGGICFFL ALAFTIMYLV KPRRLGDPSY LSWNRNPGGG R
101: PARTNKVAFI QGAAPKSCNR TLTVTKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSP KFENQISACK PEDDAGGKPI VPCGLIAWSL FNGTYTLSRN
201: NTPLAVNKKG IAWKSDKEHK FGNKVFPKNF QKGNLTGGAT LNPDIPLSEQ EDLIVWMRTA ALPTFRKLYG KIETDLENGD TIQVTLQNNY NTYSFSGNKK
301: LVLSTTSWLG GKNDFLGIAY LTVGGICFFL ALAFTIMYLV KPRRLGDPSY LSWNRNPGGG R
001: MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
Arabidopsis Description
ALIS3ALA-interacting subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.