Factsheet for Bra017577.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 1
golgi 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35146	Canola	plasma membrane	99.42	99.42
AT5G46150.1	Thale cress	golgi, peroxisome, plasma membrane	91.23	90.96
VIT_10s0003g03980.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	65.79	67.98
KRH37801	Soybean	endoplasmic reticulum, golgi, plasma membrane, plastid	68.42	67.24
KRH12833	Soybean	cytosol	47.66	64.17
Solyc08g023460.2.1	Tomato	plasma membrane	62.87	62.87
GSMUA_Achr7P01140_001	Banana	plasma membrane	63.45	62.72
TraesCS5D01G432300.1	Wheat	plasma membrane	58.77	58.43
TraesCS5A01G423800.1	Wheat	plasma membrane	58.48	58.14
TraesCS5B01G426100.1	Wheat	plasma membrane	57.89	57.56
Os03t0785500-01	Rice	plasma membrane	58.77	57.27
Zm00001d034351_P001	Maize	plasma membrane	56.73	56.23
KXG37410	Sorghum	plasma membrane	55.56	55.07
Bra003610.1-P	Field mustard	plasma membrane	53.51	53.51
Bra034736.1-P	Field mustard	plasma membrane, plastid	53.51	53.35
Bra001467.1-P	Field mustard	plastid	53.8	52.72
HORVU5Hr1G103360.3	Barley	golgi	57.89	51.83
Bra030808.1-P	Field mustard	plastid	54.68	51.8
KRH12834	Soybean	plasma membrane	14.04	48.0
Bra026722.1-P	Field mustard	cytosol, golgi, plasma membrane	53.22	26.73

Protein Annotations

EnsemblPlants:Bra017577.1	EnsemblPlants:Bra017577.1-P	EnsemblPlantsGene:Bra017577	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926	PANTHER:PTHR10926:SF29	PFAM:PF03381	PIRSF:PIRSF015840	SEG:seg
TMHMM:TMhelix	UniParc:UPI000254253D	UniProt:M4DM45	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:

Description

AT5G46150 (E=9e-170) | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein

Coordinates

chrA09:+:16618163..16619816

Molecular Weight (calculated)

39124.1 Da

IEP (calculated)

9.504

GRAVY (calculated)

-0.247

Length

342 amino acids

Sequence
(BLAST)

001: MMEVEGSNTS MNRSPQSSFV RSKALYQFKQ QKLPACKPVL TPTSVITVFM LMGFVFIPIG FVTLRASRDA IEIVDRYDVE CIPEEYRTNK LSYITDSSIL
101: KNCTRYLKVQ KFMKAPIFIY YQLDNYYQNH RRYVKSRSDQ QLLHGQEYSH TSACEPEESS NGLPIVPCGL IAWSMFNDTF TFARESAKLK VSRSNIAWKS
201: DREHKFGKDV YPFNFQNGSL IGGAKLDPKV PLSDQEDFIV WMRAAALLSF RKLYGRIEED LEPGNVVVLN LMNNYNTYSF SGQKKLILST SSWLGGRNDF
301: LGITYLVVGA SSIIISIIFM LLHLKNPRPY GDNSWNKKSL SS

Best Arabidopsis Sequence Match ( AT5G46150.2 )
(BLAST)

001: MMEVEGSMNR APDQSSFLRS RRSKALYQFK QQKLPACKPV LTPISVITVF MLMGFVFIPI GLITLRASRD AIEIIDRYDV ECIPEEYRTN KLLYITDSSI
101: PKNCTRYLKV QKYMKAPIFI YYQLDNYYQN HRRYVKSRSD QQLLHGLEYS HTSSCEPEES SNGLPIVPCG LIAWSMFNDT FTFSRERTKL NVSRNNIAWK
201: SDREHKFGKN VYPINFQNGT LIGGAKLDPK IPLSDQEDFI VWMRAAALLS FRKLYGRIEE DLEPGKVVEV NLMNNYNTYS FSGQKKLILS TSNWLGGRND
301: FLGITYLVVG SSSIVISIIF MLLHLKNPRP YGDNSWNKKS LSS

Arabidopsis Description

ALIS2Putative ALA-interacting subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q67YS6]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.