Factsheet for PGSC0003DMT400060190

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 6
plasma membrane 4
extracellular 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54320.1	PGSC0003DMT400001613	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054800.1.1	Tomato	nucleus	53.36	90.86
GSMUA_Achr6P20180_001	Banana	plastid	43.46	73.79
KRH13775	Soybean	plasma membrane, plastid	42.45	73.55
KRH44838	Soybean	plasma membrane, plastid	42.45	73.55
GSMUA_Achr11P...	Banana	plasma membrane, plastid	43.29	73.5
CDY08407	Canola	plasma membrane, plastid	41.95	72.89
Bra034736.1-P	Field mustard	plasma membrane, plastid	41.95	72.89
KRH43674	Soybean	plasma membrane, plastid	41.78	72.38
CDY42174	Canola	plastid	42.28	72.0
KRH13042	Soybean	plasma membrane	41.44	71.8
CDY42411	Canola	plastid	41.44	71.18
Bra001467.1-P	Field mustard	plastid	41.61	71.06
AT3G12740.1	Thale cress	plastid	41.61	70.86
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	41.28	70.69
TraesCS6A01G155600.1	Wheat	plasma membrane, plastid	41.11	70.4
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	41.11	70.4
CDY10503	Canola	plastid	40.94	70.32
AT1G54320.1	Thale cress	plastid	40.94	69.91
CDX79320	Canola	plasma membrane	39.43	68.92
Os02t0173800-01	Rice	plasma membrane	40.44	68.86
EES06351	Sorghum	plastid	40.27	68.77
AT1G16360.2	Thale cress	plastid	40.27	68.57
CDX67994	Canola	plasma membrane	39.26	68.42
Bra003610.1-P	Field mustard	plasma membrane	39.09	68.13
Zm00001d053778_P001	Maize	plasma membrane	39.77	67.91
Bra030808.1-P	Field mustard	plastid	41.11	67.87
CDY51005	Canola	plastid	39.77	67.71
CDX81761	Canola	plastid	39.77	67.71
TraesCS7D01G469100.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane, plastid	40.1	67.71
Zm00001d036654_P002	Maize	endoplasmic reticulum, golgi, plasma membrane, plastid	39.6	67.62
Zm00001d015401_P001	Maize	plastid	39.6	67.62
EER88783	Sorghum	plasma membrane, plastid	39.93	67.61
TraesCS7B01G384400.1	Wheat	plasma membrane	39.77	67.52
TraesCS7A01G482200.1	Wheat	plasma membrane	39.77	67.52
AT1G79450.1	Thale cress	plasma membrane	39.26	66.86
HORVU6Hr1G031530.3	Barley	plastid	39.43	66.76
Os06t0665000-01	Rice	plasma membrane	39.09	65.08
CDX67738	Canola	endoplasmic reticulum, extracellular, peroxisome	19.8	63.44
PGSC0003DMT400055262	Potato	plasma membrane	35.91	62.21
VIT_19s0085g00850.t01	Wine grape	plastid	42.79	60.28
HORVU0Hr1G022300.1	Barley	endoplasmic reticulum	39.77	59.7
Zm00001d046948_P004	Maize	plasma membrane	38.09	54.05
CDY00796	Canola	plastid	49.66	46.69
CDX73805	Canola	plastid	49.5	46.31
Bra026722.1-P	Field mustard	cytosol, golgi, plasma membrane	39.09	34.21

Protein Annotations

EnsemblPlants:PGSC0003DMT400060190	EnsemblPlantsGene:PGSC0003DMG400023414	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005576
GO:GO:0016020	GO:GO:0016021	GO:GO:0016853	GO:GO:0048046	InterPro:CDC50/LEM3_fam	InterPro:Dirigent
PANTHER:PTHR10926	PANTHER:PTHR10926:SF45	PFAM:PF03018	PFAM:PF03381	PGSC:PGSC0003DMG400023414	SEG:seg
TMHMM:TMhelix	UniParc:UPI000296A0F6	UniProt:M1C5D3	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:

Description

LEM3 (Ligand-effect modulator 3) family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023414]

Coordinates

chr5:-:50527054..50534174

Molecular Weight (calculated)

66347.0 Da

IEP (calculated)

8.555

GRAVY (calculated)

-0.292

Length

596 amino acids

Sequence
(BLAST)

001: MNPSSSTTGG AGSDDNTSIR RNSNRPKYSR FTQQELPACK PILTPKWVIS VFLLVGIVFI PIGVVSLLAS RDVVEIVDRY DSVCVPLNST DDKIGFITNS
101: SIDKTCVRTL TVPKRMKQPI YVYYQLENYY QNHRRYVKSR SDQQLKSASK RDDTGSCDPE DRVNGQPIVP CGLIAWSLFN DTYNFTVNNN QLLNVNKNGI
201: AWKSDRDHKF GKDVFPLNFQ TGPLIGGGQL KNESLDKQED LIVWMRTAAL PTFRKLYGKI EVDLEAGDTI NVTLLNNYNT YSFDGKKKLV LSTTSWIGGK
301: NDFLGIAYLT VGGLCFFLAM AFTVVYLVKP RQLGDPTYLS WNRNPGGGLC FFLAMAFTVV YLVKPRQLGD PTYLSWNRNP GARTLNNNPS STNNHHHERH
401: ETSFYMLDVL SLKHPSSRPA STRVNSHHQI PFSKPLGYFP PVGGIPLTDT NPNVGMNGLH THTLDLEGIS MTFPAIATLQ ELELGTVITI DEDIYKGSIY
501: GSSLKGKAQG MYVASSEDGS SHMMAMTTTF LGNEYEDSLR FFGVHRGDVF ESHIAVIGGT GKYHDANGYA TVKIVNVTSN KNEEAYKILS FNVYLG

Best Arabidopsis Sequence Match ( AT3G12740.1 )
(BLAST)

001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR

Arabidopsis Description

ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.