CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plasma membrane, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	vacuole
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73805	Canola	plastid	96.53	96.08
CDY42174	Canola	plastid	49.37	89.43
CDY08407	Canola	plasma membrane, plastid	48.27	89.21
CDY42411	Canola	plastid	46.85	85.59
CDY10503	Canola	plastid	46.06	84.15
AT3G12740.1	Thale cress	plastid	46.37	84.0
CDX79320	Canola	plasma membrane	39.75	73.9
KRH43674	Soybean	plasma membrane, plastid	39.75	73.26
CDX67994	Canola	plasma membrane	39.43	73.1
KRH13775	Soybean	plasma membrane, plastid	39.27	72.38
CDX67738	Canola	endoplasmic reticulum, extracellular, peroxisome	20.98	71.51
CDX81761	Canola	plastid	39.27	71.14
CDY51005	Canola	plastid	39.12	70.86
KRH13042	Soybean	plasma membrane	38.33	70.64
KRH44838	Soybean	plasma membrane, plastid	38.01	70.06
Solyc05g054800.1.1	Tomato	nucleus	38.64	70.0
GSMUA_Achr6P20180_001	Banana	plastid	38.64	69.8
GSMUA_Achr11P...	Banana	plasma membrane, plastid	38.01	68.66
Zm00001d015401_P001	Maize	plastid	37.7	68.48
Zm00001d036654_P002	Maize	endoplasmic reticulum, golgi, plasma membrane, plastid	36.91	67.05
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	36.75	66.95
Os02t0173800-01	Rice	plasma membrane	36.91	66.86
Zm00001d053778_P001	Maize	plasma membrane	36.75	66.76
TraesCS6A01G155600.1	Wheat	plasma membrane, plastid	36.59	66.67
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	36.59	66.67
EER88783	Sorghum	plasma membrane, plastid	36.91	66.48
EES06351	Sorghum	plastid	36.44	66.19
TraesCS7A01G482200.1	Wheat	plasma membrane	36.59	66.1
TraesCS7B01G384400.1	Wheat	plasma membrane	36.59	66.1
Os06t0665000-01	Rice	plasma membrane	37.07	65.64
TraesCS7D01G469100.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane, plastid	36.44	65.44
HORVU6Hr1G031530.3	Barley	plastid	35.17	63.35
VIT_19s0085g00850.t01	Wine grape	plastid	41.96	62.88
HORVU0Hr1G022300.1	Barley	endoplasmic reticulum	37.22	59.45
CDY35146	Canola	plasma membrane	29.34	54.39
CDY03242	Canola	golgi, peroxisome, plasma membrane, plastid	29.02	53.8
Zm00001d046948_P004	Maize	plasma membrane	35.17	53.1
CDX77634	Canola	golgi	9.15	51.33
PGSC0003DMT400060190	Potato	plasma membrane	46.69	49.66

Protein Annotations

Gene3D:1.10.238.10	MapMan:19.2.2.3.5.2	MapMan:24.1.2.4.1.2	MapMan:5.8.2.1.1.2	GO:A0A078EI63	InterPro:CDC50/LEM3_fam
EnsemblPlants:CDY00796	ProteinID:CDY00796	ProteinID:CDY00796.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00110694001	InterPro:IPR005176	PFAM:PF03381
PFAM:PF03556	PFAM:PF14555	InterPro:PONY_dom	PFscan:PS51229	PANTHER:PTHR10926	PANTHER:PTHR10926:SF45
SUPFAM:SSF46934	TMHMM:TMhelix	InterPro:UBA-like_sf	UniParc:UPI0004EEC072	SEG:seg	:

Description

BnaC03g37800D

Coordinates

chrLK031921:+:1183708..1190798

Molecular Weight (calculated)

72159.1 Da

IEP (calculated)

7.933

GRAVY (calculated)

-0.294

Length

634 amino acids

Sequence
(BLAST)

001: MPSNSASSSA AAAAGSADSS TSRRNSKRPK YSKFTQQELP ACKPILTPGW VILTFLVVSV IFIPLGVVSL FASQDVVEIV DRYDNDCIPA PARANKVAYI
101: QGAADKTCNR TIVVPKKMKQ PIYVYYELEN FYQNHRRYVK SRSDAQLRSV KDENQIDACK PEDDVNGKPI VPCGLIAWSL FNDTYVLSKN NQTLNVSKKG
201: IAWKSDREHK FGKNVFPKNF QMGNITGGGK LIPDVPLSEQ EDLIVWMRTA ALPTFRKLYG KIETDLQEND TIHVILKNNY NTYSFDGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFFL ALAFTIMYLV KPRRLGDPTY LSWNRVPGGE SNINIIFDYL VRAFRLQILH TMHKLSRSNR DKVQQFVAIT GASEKNALQT
401: LKASDWQLEA AFDVFYSQPQ PRSNADVRRL EELYNRYKGN TQDTSFFLLL NWNIYSDMIL ADGVSVLCSD LQVEPQDIVT LVLSWHMNAA TACEFSREEF
501: VGGLQALGVD SIKKLQEKLS FMRSELKDEQ KFHEIYNFAF GWAKEKGQKS LALDTAIGMW QLLFAEREWP LLNHWCDFLQ DRHNKAISKD TWEQLLEFAR
601: AVDPSLSNYD AEGAWPYLID EFVEYLYDKS VVEK

Best Arabidopsis Sequence Match ( AT3G12740.1 )
(BLAST)

001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR

Arabidopsis Description

ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.