Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- plasma membrane 3
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034736.1-P | Field mustard | plasma membrane, plastid | 97.43 | 99.42 |
| CDY08407 | Canola | plasma membrane, plastid | 97.14 | 99.13 |
| AT3G12740.1 | Thale cress | plastid | 86.0 | 86.0 |
| CDY42411 | Canola | plastid | 84.86 | 85.59 |
| CDY10503 | Canola | plastid | 83.43 | 84.15 |
| CDX79320 | Canola | plasma membrane | 72.0 | 73.9 |
| CDX67994 | Canola | plasma membrane | 71.43 | 73.1 |
| KRH43674 | Soybean | plasma membrane, plastid | 71.14 | 72.38 |
| GSMUA_Achr6P20180_001 | Banana | plastid | 72.0 | 71.79 |
| CDX81761 | Canola | plastid | 71.71 | 71.71 |
| KRH13775 | Soybean | plasma membrane, plastid | 70.29 | 71.51 |
| CDY51005 | Canola | plastid | 71.43 | 71.43 |
| KRH44838 | Soybean | plasma membrane, plastid | 70.0 | 71.22 |
| CDX67738 | Canola | endoplasmic reticulum, extracellular, peroxisome | 37.71 | 70.97 |
| KRH13042 | Soybean | plasma membrane | 69.71 | 70.93 |
| Solyc05g054800.1.1 | Tomato | nucleus | 70.86 | 70.86 |
| GSMUA_Achr11P... | Banana | plasma membrane, plastid | 68.29 | 68.09 |
| Os02t0173800-01 | Rice | plasma membrane | 67.71 | 67.71 |
| TraesCS6B01G183800.1 | Wheat | plasma membrane, plastid | 66.29 | 66.67 |
| TraesCS6D01G145600.2 | Wheat | plasma membrane, plastid | 66.29 | 66.67 |
| TraesCS6A01G155600.1 | Wheat | plasma membrane, plastid | 66.0 | 66.38 |
| Zm00001d036654_P002 | Maize | endoplasmic reticulum, golgi, plasma membrane, plastid | 65.71 | 65.9 |
| Os06t0665000-01 | Rice | plasma membrane | 66.57 | 65.08 |
| Zm00001d015401_P001 | Maize | plastid | 64.86 | 65.04 |
| Zm00001d053778_P001 | Maize | plasma membrane | 64.86 | 65.04 |
| EES06351 | Sorghum | plastid | 64.86 | 65.04 |
| TraesCS7A01G482200.1 | Wheat | plasma membrane | 65.14 | 64.96 |
| TraesCS7B01G384400.1 | Wheat | plasma membrane | 65.14 | 64.96 |
| EER88783 | Sorghum | plasma membrane, plastid | 65.14 | 64.77 |
| TraesCS7D01G469100.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 65.14 | 64.59 |
| HORVU6Hr1G031530.3 | Barley | plastid | 62.86 | 62.5 |
| VIT_19s0085g00850.t01 | Wine grape | plastid | 71.14 | 58.87 |
| HORVU0Hr1G022300.1 | Barley | endoplasmic reticulum | 66.57 | 58.69 |
| CDY35146 | Canola | plasma membrane | 52.86 | 54.09 |
| CDY03242 | Canola | golgi, peroxisome, plasma membrane, plastid | 52.29 | 53.51 |
| Zm00001d046948_P004 | Maize | plasma membrane | 61.43 | 51.19 |
| CDX77634 | Canola | golgi | 16.29 | 50.44 |
| CDY00796 | Canola | plastid | 89.43 | 49.37 |
| CDX73805 | Canola | plastid | 89.71 | 49.29 |
| PGSC0003DMT400060190 | Potato | plasma membrane | 72.0 | 42.28 |
Protein Annotations
| EnsemblPlants:CDY42174 | EnsemblPlantsGene:GSBRNA2T00074367001 | GO:A0A078HXV1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:CDC50/LEM3_fam | PANTHER:PTHR10926 | PANTHER:PTHR10926:SF45 | PFAM:PF03381 | PIRSF:PIRSF015840 | ProteinID:CDY42174 |
| ProteinID:CDY42174.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EAF310 | UniProt:A0A078HXV1 | MapMan:5.8.2.1.1.2 |
| MapMan:24.1.2.4.1.2 | : | : | : | : | : |
Description
BnaC05g40450DBnaC05g40450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXV1]
Coordinates
chrLK032516:+:278841..280975
Molecular Weight (calculated)
39191.0 Da
IEP (calculated)
9.919
GRAVY (calculated)
-0.335
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSNTASSSS APAGSADSSA SRTKSKRPKY SKFTQQELPA CKPILTPGWV ILTFLVISVI FIPLGVVSLF ASQDVVEIVD RYDNDCVPTP ARANKVAYIQ
101: GVSDKSCNRT LVVPKKMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSVK DENQIDACKP EDDVNGRPIV PCGLIAWSLF NDTYALSKNN QPLTVNKRGI
201: AWKSDREHKF GKNVFPKNFQ EGNITGGGRL DANKSLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEKGDT IHVTLLNNYN TYSFDGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFFLA LVFTIMYLVK PRRLGDPTYL SWNRVPGGGR
101: GVSDKSCNRT LVVPKKMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSVK DENQIDACKP EDDVNGRPIV PCGLIAWSLF NDTYALSKNN QPLTVNKRGI
201: AWKSDREHKF GKNVFPKNFQ EGNITGGGRL DANKSLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEKGDT IHVTLLNNYN TYSFDGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFFLA LVFTIMYLVK PRRLGDPTYL SWNRVPGGGR
001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR
Arabidopsis Description
ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.