Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67994 | Canola | plasma membrane | 98.53 | 98.25 |
| AT1G79450.1 | Thale cress | plasma membrane | 90.32 | 88.0 |
| CDX81761 | Canola | plastid | 85.04 | 82.86 |
| CDY51005 | Canola | plastid | 84.75 | 82.57 |
| CDY08407 | Canola | plasma membrane, plastid | 73.31 | 72.89 |
| CDY10503 | Canola | plastid | 73.9 | 72.62 |
| CDY42411 | Canola | plastid | 73.61 | 72.33 |
| CDY42174 | Canola | plastid | 73.9 | 72.0 |
| KRH13042 | Soybean | plasma membrane | 69.5 | 68.9 |
| KRH44838 | Soybean | plasma membrane, plastid | 69.5 | 68.9 |
| GSMUA_Achr6P20180_001 | Banana | plastid | 70.67 | 68.66 |
| KRH13775 | Soybean | plasma membrane, plastid | 67.74 | 67.15 |
| KRH43674 | Soybean | plasma membrane, plastid | 67.45 | 66.86 |
| GSMUA_Achr11P... | Banana | plasma membrane, plastid | 67.16 | 65.24 |
| Solyc05g054800.1.1 | Tomato | nucleus | 66.86 | 65.14 |
| TraesCS7A01G482200.1 | Wheat | plasma membrane | 65.98 | 64.1 |
| TraesCS7B01G384400.1 | Wheat | plasma membrane | 65.98 | 64.1 |
| Os02t0173800-01 | Rice | plasma membrane | 65.69 | 64.0 |
| TraesCS7D01G469100.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 65.69 | 63.46 |
| Zm00001d036654_P002 | Maize | endoplasmic reticulum, golgi, plasma membrane, plastid | 64.81 | 63.32 |
| CDX67738 | Canola | endoplasmic reticulum, extracellular, peroxisome | 34.31 | 62.9 |
| EER88783 | Sorghum | plasma membrane, plastid | 64.81 | 62.78 |
| Zm00001d053778_P001 | Maize | plasma membrane | 63.93 | 62.46 |
| TraesCS6D01G145600.2 | Wheat | plasma membrane, plastid | 63.64 | 62.36 |
| Zm00001d015401_P001 | Maize | plastid | 63.64 | 62.18 |
| TraesCS6A01G155600.1 | Wheat | plasma membrane, plastid | 63.34 | 62.07 |
| TraesCS6B01G183800.1 | Wheat | plasma membrane, plastid | 63.34 | 62.07 |
| Os06t0665000-01 | Rice | plasma membrane | 64.81 | 61.73 |
| EES06351 | Sorghum | plastid | 63.05 | 61.6 |
| HORVU6Hr1G031530.3 | Barley | plastid | 61.0 | 59.09 |
| HORVU0Hr1G022300.1 | Barley | endoplasmic reticulum | 66.57 | 57.18 |
| VIT_19s0085g00850.t01 | Wine grape | plastid | 69.5 | 56.03 |
| CDY35146 | Canola | plasma membrane | 54.25 | 54.09 |
| CDY03242 | Canola | golgi, peroxisome, plasma membrane, plastid | 54.25 | 54.09 |
| CDX77634 | Canola | golgi | 17.3 | 52.21 |
| Zm00001d046948_P004 | Maize | plasma membrane | 62.17 | 50.48 |
| CDY00796 | Canola | plastid | 73.9 | 39.75 |
| PGSC0003DMT400060190 | Potato | plasma membrane | 68.92 | 39.43 |
| CDX73805 | Canola | plastid | 73.61 | 39.4 |
Protein Annotations
| EnsemblPlants:CDX79320 | EnsemblPlantsGene:GSBRNA2T00131997001 | GO:A0A078CR30 | GO:GO:0005575 | GO:GO:0016020 | InterPro:CDC50/LEM3_fam |
| PANTHER:PTHR10926 | PANTHER:PTHR10926:SF45 | PFAM:PF03381 | PIRSF:PIRSF015840 | ProteinID:CDX79320 | ProteinID:CDX79320.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EABB3C | MapMan:5.8.2.1.1.2 | MapMan:24.1.2.4.1.2 | : |
Description
BnaC06g19830D
Coordinates
chrLK031817:+:1339097..1341450
Molecular Weight (calculated)
38136.6 Da
IEP (calculated)
9.181
GRAVY (calculated)
-0.322
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGGGGSSE PSGVKKTSKR PKYSRFTQQE LPACKPILTP SWVILTFLVA GVVFIPLGVI CLFASQGVVE IVDRYDTDCV PESSRANKVA YIQSEGDKMC
101: NRTITVTKTM KHPVYVYYQL ENYYQNHRRY VKSRNDAQLR SPKEENDVQT CAPEDNVAGH PIVPCGLVAW SLFNDTYKFS RNSQELLVNK KDISWKSDRD
201: SKFGKNVYPK NFQTGAPIGG GTLDPKKPLS EQEDLIVWMR TAALPIFRKL YGKIETDLNA GDTIMVLLEN NYNTYSFNGE KKLVLSTTSW LGGRNDFLGV
301: AYLTVGSICL FLAVTFSVLY LVKPRQLGDP SYLSWNRSPG G
101: NRTITVTKTM KHPVYVYYQL ENYYQNHRRY VKSRNDAQLR SPKEENDVQT CAPEDNVAGH PIVPCGLVAW SLFNDTYKFS RNSQELLVNK KDISWKSDRD
201: SKFGKNVYPK NFQTGAPIGG GTLDPKKPLS EQEDLIVWMR TAALPIFRKL YGKIETDLNA GDTIMVLLEN NYNTYSFNGE KKLVLSTTSW LGGRNDFLGV
301: AYLTVGSICL FLAVTFSVLY LVKPRQLGDP SYLSWNRSPG G
001: MSSTAASSTV GGGGSSEISG VKKTSKRPKY SRFTQQELPA CKPILTPRWV ILTFLVAGVV FIPLGVICLF ASQGVVEIVD RYDTDCIPTS SRNNMVAYIQ
101: GEGDKICKRT ITVTKAMKHP VYVYYQLENF YQNHRRYVKS RNDAQLRSPK EEHDVKTCAP EDNVGGEPIV PCGLVAWSLF NDTYSFSRNS QQLLVNKKGI
201: SWKSDRENKF GKNVFPKNFQ KGAPIGGGTL NISKPLSEQE DLIVWMRTAA LPTFRKLYGK IETDLHAGDT ITVLLQNNYN TYSFNGQKKL VLSTTSWLGG
301: RNDFLGIAYL TVGSICLFLA VTFAVLYLVK PRQLGDPSYL SWNRSAGGLQ
101: GEGDKICKRT ITVTKAMKHP VYVYYQLENF YQNHRRYVKS RNDAQLRSPK EEHDVKTCAP EDNVGGEPIV PCGLVAWSLF NDTYSFSRNS QQLLVNKKGI
201: SWKSDRENKF GKNVFPKNFQ KGAPIGGGTL NISKPLSEQE DLIVWMRTAA LPTFRKLYGK IETDLHAGDT ITVLLQNNYN TYSFNGQKKL VLSTTSWLGG
301: RNDFLGIAYL TVGSICLFLA VTFAVLYLVK PRQLGDPSYL SWNRSAGGLQ
Arabidopsis Description
ALIS5ALA-interacting subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8W0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.