CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
golgi 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038750_P006	Maize	plasma membrane	91.23	92.04
TraesCS1B01G364300.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	78.95	79.41
TraesCS1D01G352700.1	Wheat	plasma membrane	78.66	79.12
Os05t0529900-00	Rice	plasma membrane	77.49	77.03
TraesCS1A01G350000.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	78.36	76.79
KXG40321	Sorghum	plasma membrane	71.93	72.78
GSMUA_Achr4P29460_001	Banana	plasma membrane	69.3	68.1
GSMUA_Achr2P11380_001	Banana	plasma membrane	67.54	66.96
VIT_00s2279g00010.t01	Wine grape	cytosol	45.61	65.27
VIT_00s1667g00010.t01	Wine grape	plasma membrane	58.19	64.61
KRH09908	Soybean	plasma membrane	61.99	61.63
EES06351	Sorghum	plastid	61.11	59.89
KRG94866	Soybean	plasma membrane	60.82	59.6
EER88783	Sorghum	plasma membrane, plastid	60.82	59.09
PGSC0003DMT400055262	Potato	plasma membrane	58.77	58.43
Solyc02g036440.2.1	Tomato	plasma membrane	58.48	58.14
HORVU1Hr1G081400.10	Barley	cytosol, endoplasmic reticulum	55.56	54.76
KXG37410	Sorghum	plasma membrane	52.34	51.88
KRH23423	Soybean	plasma membrane	57.02	51.18
EER97184	Sorghum	plasma membrane	52.92	50.42
VIT_16s0115g00160.t01	Wine grape	cytosol	30.7	49.53
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	50.29	48.59
KXG36190	Sorghum	plastid	41.81	47.35
HORVU6Hr1G093390.1	Barley	cytosol, endoplasmic reticulum	47.66	44.54

Protein Annotations

MapMan:24.1.2.4.1.2	MapMan:5.8.2.1.1.2	EntrezGene:8068969	UniProt:C5Z1H1	InterPro:CDC50/LEM3_fam	EnsemblPlants:EES19858
ProteinID:EES19858	ProteinID:EES19858.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PFAM:PF03381
PIRSF:PIRSF015840	PANTHER:PTHR10926	PANTHER:PTHR10926:SF26	EnsemblPlantsGene:SORBI_3009G207700	TMHMM:TMhelix	UniParc:UPI0001A89161
RefSeq:XP_002441428.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:55517622..55523438

Molecular Weight (calculated)

37966.7 Da

IEP (calculated)

9.174

GRAVY (calculated)

-0.198

Length

342 amino acids

Sequence
(BLAST)

001: MSLPASDSDS LASRRSKKPK YSKFTQQELP ACKPLLTPGI VIGAFSLIGV IFVPIGLASL AASQNIVELI DRYDAECVSA NDKVGFIQDT KTDKACTRKI
101: TVPKPMKGPI HIYYQLENFY QNHRRYVKSR NDKQLLYKDA ASTITNCEPE AISEDGGKPI VPCGLIAWSL FNDTYSFSLN KKAVEVNKKN IAWDSDKNKK
201: FGSDVFPSNF QKGGLIGGAK LNEKIPLSEQ EDLIVWMRTA ALPTFRKLYG RIESDMMASD EITVVIQNNY NTYSFGGTKA LVLSTTSWIG GRNNFIGVAY
301: VAIGGICLFL AMGFVILYVI KPRALGDPNY LSWNKENPDH PY

Best Arabidopsis Sequence Match ( AT3G12740.1 )
(BLAST)

001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR

Arabidopsis Description

ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.