Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH63357 | Soybean | nucleus | 89.71 | 91.96 |
| VIT_17s0000g06020.t01 | Wine grape | nucleus | 63.24 | 70.11 |
| KRH56919 | Soybean | nucleus | 67.16 | 65.87 |
| KRH03466 | Soybean | nucleus | 65.93 | 65.13 |
| Solyc03g116320.2.1 | Tomato | nucleus | 60.29 | 60.15 |
| PGSC0003DMT400001613 | Potato | nucleus | 60.54 | 59.66 |
| GSMUA_Achr4P00500_001 | Banana | nucleus | 39.46 | 59.19 |
| GSMUA_Achr6P02720_001 | Banana | nucleus | 38.48 | 58.15 |
| CDY36943 | Canola | nucleus | 26.23 | 56.61 |
| GSMUA_Achr7P20990_001 | Banana | nucleus | 37.01 | 56.34 |
| KRH49755 | Soybean | nucleus | 25.25 | 52.02 |
| CDY24170 | Canola | nucleus | 30.88 | 51.85 |
| KRH74835 | Soybean | nucleus | 46.81 | 49.61 |
| KRH70699 | Soybean | nucleus | 50.74 | 48.82 |
| Os06t0226700-01 | Rice | nucleus | 43.63 | 45.99 |
| GSMUA_Achr7P17990_001 | Banana | nucleus | 37.5 | 45.54 |
| EER88112 | Sorghum | nucleus | 43.63 | 45.18 |
| Zm00001d052256_P001 | Maize | cytosol, nucleus, peroxisome | 42.65 | 44.73 |
| Zm00001d037221_P001 | Maize | cytosol, nucleus, peroxisome | 41.18 | 44.33 |
| KRG99108 | Soybean | nucleus | 29.66 | 44.32 |
| EES07255 | Sorghum | nucleus | 43.14 | 44.22 |
| Bra018126.1-P | Field mustard | nucleus | 50.49 | 44.21 |
| TraesCS6A01G306500.1 | Wheat | nucleus | 43.38 | 43.81 |
| TraesCS6D01G285600.1 | Wheat | nucleus | 42.89 | 43.64 |
| HORVU6Hr1G075650.1 | Barley | nucleus | 42.89 | 43.53 |
| Zm00001d018045_P001 | Maize | cytosol, nucleus, peroxisome | 42.65 | 43.5 |
| TraesCS6B01G334900.1 | Wheat | nucleus | 42.65 | 43.28 |
| Os02t0747400-01 | Rice | nucleus | 43.38 | 43.17 |
| Zm00001d044836_P001 | Maize | nucleus | 37.75 | 43.14 |
| KRH45889 | Soybean | nucleus | 30.15 | 43.01 |
| TraesCS7B01G091900.1 | Wheat | cytosol, nucleus, peroxisome | 38.97 | 42.74 |
| AT3G47620.1 | Thale cress | nucleus | 50.0 | 41.72 |
| HORVU7Hr1G038130.1 | Barley | nucleus | 40.69 | 41.5 |
| TraesCS7D01G187600.1 | Wheat | cytosol | 40.69 | 41.5 |
| KRH32533 | Soybean | plastid | 18.63 | 40.0 |
| KRH30615 | Soybean | cytosol | 14.71 | 38.46 |
| KRH19921 | Soybean | plastid | 17.4 | 38.38 |
| KRG89108 | Soybean | nucleus, plastid | 21.08 | 37.07 |
| KRG90619 | Soybean | nucleus | 21.81 | 36.78 |
| KRH36141 | Soybean | nucleus | 21.81 | 36.18 |
| KRH40904 | Soybean | nucleus | 20.83 | 35.56 |
| KRH40902 | Soybean | nucleus | 20.83 | 35.42 |
| KRH06094 | Soybean | plastid | 28.43 | 32.13 |
| KRG94577 | Soybean | nucleus | 24.51 | 30.3 |
| KRH06910 | Soybean | nucleus | 24.26 | 28.7 |
| KRH35393 | Soybean | nucleus | 20.59 | 27.01 |
| KRH26343 | Soybean | nucleus, plastid | 28.43 | 26.73 |
| KRG91429 | Soybean | nucleus | 21.08 | 26.38 |
| KRH57263 | Soybean | nucleus | 21.32 | 25.14 |
| KRH03994 | Soybean | nucleus | 20.83 | 25.0 |
| KRH48289 | Soybean | nucleus | 19.85 | 24.18 |
| KRH65181 | Soybean | nucleus | 19.85 | 24.11 |
Protein Annotations
| EntrezGene:100792383 | MapMan:15.5.19 | EMBL:ACUP02003540 | EnsemblPlantsGene:GLYMA_06G193000 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | UniProt:I1KCS3 | InterPro:IPR017887 | EnsemblPlants:KRH54542 | ProteinID:KRH54542 | ProteinID:KRH54542.1 |
| PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF40 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP |
| UniParc:UPI00023395C1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:17123724..17125692
Molecular Weight (calculated)
44496.4 Da
IEP (calculated)
7.277
GRAVY (calculated)
-0.800
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGSDDFHY HHHLHNHNHH RQNFPFQLLE KKEDPQDPSS CSTSSPYPSL AISAEPSTSN NNNQLLPTPS SEPSPKKPPP KRTSTKDRHT KVDGRGRRIR
101: MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPSVIAAT GTGTIPANFT SLNISLRSSG SSMSVPSQLR SSYFHNSSFS LQPRRSLFLE NTNTNTPNTT
201: TTTLLNFQSN NNNNPIFQIQ PKHELRESSS LDLSSENNNN NEEGNLGRKR RPLEQDLSST MQHQVGIGNY LMQSSTTSGT IPASHHAQIP ANIWMLANSN
301: SHHNQGGGVS VSGGEAPPLW TFPGGVSNSA LYRGTMSSGL HFMNFPTPMA LLPGQQLGSS GIGGNMNEGH LNMLSGLNPY RTTVIGVSES QASESQQSHH
401: GGSEDQHE
101: MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPSVIAAT GTGTIPANFT SLNISLRSSG SSMSVPSQLR SSYFHNSSFS LQPRRSLFLE NTNTNTPNTT
201: TTTLLNFQSN NNNNPIFQIQ PKHELRESSS LDLSSENNNN NEEGNLGRKR RPLEQDLSST MQHQVGIGNY LMQSSTTSGT IPASHHAQIP ANIWMLANSN
301: SHHNQGGGVS VSGGEAPPLW TFPGGVSNSA LYRGTMSSGL HFMNFPTPMA LLPGQQLGSS GIGGNMNEGH LNMLSGLNPY RTTVIGVSES QASESQQSHH
401: GGSEDQHE
001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E
Arabidopsis Description
TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.