CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08874
KRH22653
KRH26664
KRH35244
KRH38387
KRH69305

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33390.1	KRH69305	AT1G14340.1	21798944
AT2G33390.1	KRH08874	AT4G25660.1	21798944
AT2G33390.1	KRH35244	AT4G25660.1	21798944
AT2G33390.1	KRH38387	AT4G25660.1	21798944
AT2G33390.1	KRH22653	AT5G22290.1	21798944
AT2G33390.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34540	Soybean	nucleus	91.74	92.59
KRH33624	Soybean	cytosol, nucleus, plastid	61.47	68.37
VIT_05s0049g01730.t01	Wine grape	cytosol, nucleus, plastid	47.71	56.52
AT2G33390.1	Thale cress	cytosol, extracellular, nucleus	49.54	55.1
CDX84690	Canola	cytosol, nucleus, plastid	44.04	53.33
Bra022937.1-P	Field mustard	cytosol, nucleus, plastid	43.12	52.22
CDX79525	Canola	cytosol, nucleus, plastid	43.12	51.65
PGSC0003DMT400044192	Potato	nucleus	45.87	51.55
Solyc09g090540.2.1	Tomato	nucleus	44.95	50.52
CDY23741	Canola	cytosol, nucleus, plastid	45.87	49.02
CDY17170	Canola	cytosol, nucleus, plastid	44.95	47.12
CDY19489	Canola	cytosol, nucleus, plastid	44.95	47.12
Bra021848.1-P	Field mustard	cytosol, nucleus, plastid	36.7	47.06
KRG90361	Soybean	cytosol, nucleus, plastid	48.62	46.9
Bra005499.1-P	Field mustard	cytosol, nucleus, plastid	34.86	39.58
CDY18728	Canola	nucleus	41.28	25.14

Protein Annotations

EMBL:ACUP02012736	EnsemblPlants:KRG92271	EnsemblPlantsGene:GLYMA_20G201100	EntrezGene:100786350	GO:GO:0008150	GO:GO:0009628
GO:GO:0009642	InterPro:OHP2	PANTHER:PTHR33401	PANTHER:PTHR33401:SF2	ProteinID:KRG92271	ProteinID:KRG92271.1
ProteinID:KRG92272.1	SEG:seg	UniParc:UPI000233DBA1	UniProt:K7N4M9	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr20:+:43809758..43812307

Molecular Weight (calculated)

12149.1 Da

IEP (calculated)

4.798

GRAVY (calculated)

-0.952

Length

109 amino acids

Sequence
(BLAST)

001: MDTKKSTKDT NGCINKPMAV TVTLTVASLE GRKVEDHSNR EDESDSNSLL PVRKGGIARK SDKTYRKRKV QWNDRIGNKL VEVLEYEPSD VSDSEDEDDG
101: GDPCICSIM

Best Arabidopsis Sequence Match ( AT2G33390.1 )
(BLAST)

1: MDTGRGEGKE ANGCENKAIV SLNSSEIEDQ IFEEEESESQ CLLPPRKGGM SRSTDKIKRT VQWNDIKGDN LAEVLVYEPS EVSDTEDDDS DSCICTIM

Arabidopsis Description

Putative uncharacterized protein At2g33390 [Source:UniProtKB/TrEMBL;Acc:O22789]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.