Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84690 | Canola | cytosol, nucleus, plastid | 36.87 | 73.33 |
| CDX79525 | Canola | cytosol, nucleus, plastid | 35.2 | 69.23 |
| CDY23741 | Canola | cytosol, nucleus, plastid | 36.87 | 64.71 |
| CDY17170 | Canola | cytosol, nucleus, plastid | 36.31 | 62.5 |
| CDY19489 | Canola | cytosol, nucleus, plastid | 35.2 | 60.58 |
| KRH33624 | Soybean | cytosol, nucleus, plastid | 24.02 | 43.88 |
| KRH34540 | Soybean | nucleus | 25.14 | 41.67 |
| VIT_05s0049g01730.t01 | Wine grape | cytosol, nucleus, plastid | 21.23 | 41.3 |
| KRG92271 | Soybean | nucleus | 25.14 | 41.28 |
| PGSC0003DMT400044192 | Potato | nucleus | 21.79 | 40.21 |
| Solyc09g090540.2.1 | Tomato | nucleus | 21.79 | 40.21 |
| KRG90361 | Soybean | cytosol, nucleus, plastid | 18.99 | 30.09 |
Protein Annotations
| EnsemblPlants:CDY18728 | EnsemblPlantsGene:GSBRNA2T00005818001 | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009642 | InterPro:OHP2 |
| PANTHER:PTHR33401 | PANTHER:PTHR33401:SF2 | ProteinID:CDY18728 | ProteinID:CDY18728.1 | SEG:seg | UniParc:UPI0004EEF4F1 |
| UniProt:A0A078G250 | MapMan:35.2 | : | : | : | : |
Description
BnaC08g08880DBnaC08g08880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G250]
Coordinates
chrLK032088:+:2000..3108
Molecular Weight (calculated)
20095.0 Da
IEP (calculated)
8.956
GRAVY (calculated)
-0.713
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKKSVSSH EENHLLLSST TKKIVGFVDG STRSKSSMAF LGGYPRRSKS STFPEFQSTP SGLRCDCCEI TGVDAKMKEK KRRCSKGFRF TMASIVLTTI
101: QRLGLHQRNK REDQVCEEEE ESKSQCLLPP PRKGGMSRST DKIKRTVQWT DNKGDNLAEV LVYEPSEVSD SDACICTIM
101: QRLGLHQRNK REDQVCEEEE ESKSQCLLPP PRKGGMSRST DKIKRTVQWT DNKGDNLAEV LVYEPSEVSD SDACICTIM
1: MDTGRGEGKE ANGCENKAIV SLNSSEIEDQ IFEEEESESQ CLLPPRKGGM SRSTDKIKRT VQWNDIKGDN LAEVLVYEPS EVSDTEDDDS DSCICTIM
Arabidopsis Description
Putative uncharacterized protein At2g33390 [Source:UniProtKB/TrEMBL;Acc:O22789]
SUBAcon: [extracellular,nucleus,cytosol]
SUBAcon: [extracellular,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.