Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0026g01970.t01 | |
| VIT_06s0080g00970.t01 | |
| VIT_16s0050g01050.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33390.1 | VIT_01s0026g01970.t01 | AT1G14340.1 | 21798944 |
| AT2G33390.1 | VIT_16s0050g01050.t01 | AT4G25660.1 | 21798944 |
| AT2G33390.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33624 | Soybean | cytosol, nucleus, plastid | 61.96 | 58.16 |
| AT2G33390.1 | Thale cress | cytosol, extracellular, nucleus | 54.35 | 51.02 |
| KRH34540 | Soybean | nucleus | 59.78 | 50.93 |
| CDX84690 | Canola | cytosol, nucleus, plastid | 47.83 | 48.89 |
| PGSC0003DMT400044192 | Potato | nucleus | 51.09 | 48.45 |
| Bra022937.1-P | Field mustard | cytosol, nucleus, plastid | 46.74 | 47.78 |
| KRG92271 | Soybean | nucleus | 56.52 | 47.71 |
| Solyc09g090540.2.1 | Tomato | nucleus | 50.0 | 47.42 |
| CDY17170 | Canola | cytosol, nucleus, plastid | 51.09 | 45.19 |
| CDY19489 | Canola | cytosol, nucleus, plastid | 51.09 | 45.19 |
| CDY23741 | Canola | cytosol, nucleus, plastid | 50.0 | 45.1 |
| CDX79525 | Canola | cytosol, nucleus, plastid | 44.57 | 45.05 |
| KRG90361 | Soybean | cytosol, nucleus, plastid | 50.0 | 40.71 |
| Bra021848.1-P | Field mustard | cytosol, nucleus, plastid | 35.87 | 38.82 |
| Bra005499.1-P | Field mustard | cytosol, nucleus, plastid | 34.78 | 33.33 |
| CDY18728 | Canola | nucleus | 41.3 | 21.23 |
Protein Annotations
| ArrayExpress:VIT_05s0049g01730 | EMBL:FN595496 | EnsemblPlants:VIT_05s0049g01730.t01 | EnsemblPlantsGene:VIT_05s0049g01730 | EntrezGene:100252766 | EntrezGene:LOC100252766 |
| GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009642 | InterPro:OHP2 | PANTHER:PTHR33401 | PANTHER:PTHR33401:SF2 |
| ProteinID:CBI23703 | ProteinID:CBI23703.3 | RefSeq:XP_002285431 | RefSeq:XP_002285431.1 | SEG:seg | unigene:Vvi.11827 |
| UniParc:UPI0001983543 | UniProt:D7SZM5 | wikigene:100252766 | wikigene:LOC100252766 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr5:-:9170116..9176579
Molecular Weight (calculated)
10451.1 Da
IEP (calculated)
4.358
GRAVY (calculated)
-1.071
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MDVKDPINCT NKPLVALDSP KIENRDDGED SESNSLLPPR RGGMSRRQDK VRRKVQWNDR NGNKLVEVLE FQPSDVSDTD DEESDSCICT LM
1: MDTGRGEGKE ANGCENKAIV SLNSSEIEDQ IFEEEESESQ CLLPPRKGGM SRSTDKIKRT VQWNDIKGDN LAEVLVYEPS EVSDTEDDDS DSCICTIM
Arabidopsis Description
Putative uncharacterized protein At2g33390 [Source:UniProtKB/TrEMBL;Acc:O22789]
SUBAcon: [extracellular,nucleus,cytosol]
SUBAcon: [extracellular,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.