Factsheet for VIT_01s0026g01970.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g06660.t01
VIT_04s0023g03890.t01
VIT_04s0023g03910.t01
VIT_07s0005g04750.t01
VIT_07s0031g00020.t01
VIT_10s0003g00550.t01
VIT_12s0035g01150.t01
VIT_12s0057g01250.t01
VIT_14s0060g01340.t01
VIT_14s0066g00160.t01
VIT_16s0013g00170.t01
VIT_19s0090g01190.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14340.1	VIT_07s0005g04750.t01	AT1G08480.1	21798944
AT1G14340.1	VIT_14s0060g01340.t01	AT1G09180.1	21798944
AT1G14340.1	VIT_16s0013g00170.t01	AT1G09180.1	21798944
AT1G14340.1	VIT_14s0060g01340.t01	AT1G56330.1	21798944
AT1G14340.1	VIT_16s0013g00170.t01	AT1G56330.1	21798944
AT1G14340.1	VIT_14s0066g00160.t01	AT3G01660.1	21798944
AT1G14340.1	VIT_12s0057g01250.t01	AT3G07670.1	21798944
AT1G14340.1	VIT_12s0035g01150.t01	AT3G11730.1	21798944
AT1G14340.1	VIT_07s0031g00020.t01	AT3G50110.1	21798944
AT1G14340.1	VIT_14s0060g01340.t01	AT4G02080.1	21798944
AT1G14340.1	VIT_16s0013g00170.t01	AT4G02080.1	21798944
AT1G14340.1	VIT_04s0008g06660.t01	AT4G31830.1	21798944
AT1G14340.1	VIT_19s0090g01190.t01	AT5G55200.1	21798944
AT1G14340.1	VIT_10s0003g00550.t01	AT5G60860.1	21798944
AT1G14340.1	VIT_04s0023g03890.t01	AT5G66110.1	21798944
AT1G14340.1	VIT_04s0023g03910.t01	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065786	Potato	cytosol, nucleus, plastid	67.48	67.76
Bra019660.1-P	Field mustard	cytosol	64.63	65.16
CDY62016	Canola	nucleus	61.79	64.96
CDX96860	Canola	nucleus	64.23	64.75
Bra016705.1-P	Field mustard	nucleus	63.82	64.34
AT1G14340.1	Thale cress	nucleus	63.82	64.34
GSMUA_Achr3P19960_001	Banana	cytosol	63.01	64.05
CDY49093	Canola	cytosol	63.41	63.67
CDX84035	Canola	nucleus	63.01	63.52
KRH69305	Soybean	nucleus	68.7	58.08
Zm00001d026425_P003	Maize	cytosol	57.32	57.79
EES12950	Sorghum	cytosol, nucleus, plastid	56.1	56.56
TraesCS2D01G523400.1	Wheat	nucleus	55.28	55.74
TraesCS2B01G551100.1	Wheat	nucleus	54.88	55.33
TraesCS2A01G521600.1	Wheat	nucleus	54.47	54.92
Zm00001d002122_P007	Maize	cytosol, nucleus, plastid	55.28	54.62
Solyc05g007200.2.1	Tomato	mitochondrion	67.07	54.1
HORVU2Hr1G115210.1	Barley	cytosol, nucleus, plastid	54.47	53.39
Os04t0641400-02	Rice	plastid	55.28	47.39
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	41.46	36.82
VIT_08s0032g00290.t01	Wine grape	cytosol	38.62	35.45
VIT_01s0011g06050.t01	Wine grape	cytosol	40.65	35.21
VIT_02s0012g01860.t01	Wine grape	cytosol	39.84	34.75

Protein Annotations

EntrezGene:100251604	wikigene:100251604	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CCB56568	ProteinID:CCB56568.1
UniProt:F6HPE0	EMBL:FN596002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44136
PANTHER:PTHR44136:SF7	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EntrezGene:SUC12
wikigene:SUC12	UniParc:UPI00015CBDF4	ArrayExpress:VIT_01s0026g01970	EnsemblPlantsGene:VIT_01s0026g01970	EnsemblPlants:VIT_01s0026g01970.t01	InterPro:Vip1-like_RRM_plant
unigene:Vvi.7164	RefSeq:XP_002276614	RefSeq:XP_002276614.1	RefSeq:XP_002276661	RefSeq:XP_002276661.1	RefSeq:XP_003631279
RefSeq:XP_003631279.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:11323712..11332337

Molecular Weight (calculated)

26476.9 Da

IEP (calculated)

5.359

GRAVY (calculated)

-0.174

Length

246 amino acids

Sequence
(BLAST)

001: MSTSGHTIEV TSLSPKVTEK DVYDFFAFSG AIERVEMVRS ADECACTAYV TFKDAYAVET AVLLSGATIV DQRVCITRWG HYEDEFDLWN RPTWKLEDET
101: SSTHAPETNR SYPDAGEAVT MAQEVVKTML AKGYILGKDA LSKAKTFDES HQFSATAVAT VAELSQRIGL TDKFCAGVEA AKSVDQRYHI SEITKSAVSA
201: TGRTAAAAAT TVVNSSYFSK GALWVSDALS RAAKAAGDLG SHGVNK

Best Arabidopsis Sequence Match ( AT1G14340.1 )
(BLAST)

001: MDHQFGYGVE VTGLSPSVTH NDLIDFFSFS GTIQDIDIVR SGEQACTAYV MFKDSYSQET AVLLTGATIL DQRVCITRWG QHHEEFDFWN ATSRGFEDES
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q949S4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.