Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_09s0002g00720.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G66110.1 | VIT_09s0002g00720.t01 | AT1G54060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0023g03910.t01 | Wine grape | cytosol | 74.38 | 98.35 |
| VIT_03s0038g02440.t01 | Wine grape | cytosol | 70.62 | 72.9 |
| Bra009662.1-P | Field mustard | cytosol | 55.0 | 72.73 |
| AT5G66110.1 | Thale cress | cytosol | 64.38 | 70.07 |
| CDX88005 | Canola | cytosol | 63.12 | 69.66 |
| CDY07874 | Canola | cytosol | 63.12 | 69.66 |
| Solyc02g083550.1.1 | Tomato | cytosol | 68.12 | 68.55 |
| GSMUA_Achr1P02370_001 | Banana | cytosol, plastid | 65.62 | 67.74 |
| GSMUA_Achr4P25770_001 | Banana | cytosol, plastid | 65.0 | 67.1 |
| PGSC0003DMT400009390 | Potato | cytosol | 66.25 | 66.67 |
| Zm00001d004138_P001 | Maize | cytosol | 58.12 | 60.0 |
| Os04t0244800-01 | Rice | plasma membrane | 56.88 | 58.71 |
| TraesCS6A01G043000.1 | Wheat | cytosol | 58.12 | 58.49 |
| TraesCS6B01G059000.1 | Wheat | cytosol | 58.12 | 58.49 |
| TraesCS6D01G049600.1 | Wheat | cytosol | 58.12 | 58.49 |
| EES11880 | Sorghum | cytosol | 56.25 | 58.06 |
| TraesCS2A01G064900.1 | Wheat | nucleus | 56.25 | 58.06 |
| TraesCS2B01G077100.1 | Wheat | cytosol, plastid | 55.62 | 57.42 |
| TraesCS2D01G063000.1 | Wheat | cytosol, plastid | 55.62 | 57.42 |
| VIT_01s0011g04700.t01 | Wine grape | cytosol | 51.88 | 56.46 |
| Os03t0156600-01 | Rice | cytosol | 53.75 | 55.48 |
| VIT_14s0006g01800.t01 | Wine grape | cytosol | 50.0 | 54.79 |
| HORVU7Hr1G090970.1 | Barley | mitochondrion | 54.38 | 54.72 |
| EER92834 | Sorghum | cytosol | 52.5 | 53.85 |
| EES14354 | Sorghum | cytosol | 50.62 | 53.64 |
| Zm00001d034978_P001 | Maize | cytosol | 50.62 | 53.64 |
| TraesCS7D01G379100.1 | Wheat | mitochondrion, plastid | 53.75 | 53.42 |
| TraesCS7B01G285400.1 | Wheat | mitochondrion, plastid | 53.75 | 53.42 |
| TraesCS7A01G382700.1 | Wheat | mitochondrion, plastid | 53.75 | 53.42 |
| Zm00001d027720_P001 | Maize | cytosol | 51.88 | 53.21 |
| HORVU5Hr1G069380.2 | Barley | cytosol | 49.38 | 51.97 |
| Zm00001d052760_P001 | Maize | cytosol | 48.75 | 51.66 |
| Os01t0507700-01 | Rice | plasma membrane | 48.75 | 51.66 |
| TraesCS5B01G242000.1 | Wheat | cytosol | 48.75 | 51.32 |
| TraesCS5A01G244000.1 | Wheat | cytosol | 48.75 | 51.32 |
| TraesCS5D01G250700.1 | Wheat | cytosol | 48.75 | 51.32 |
| VIT_07s0031g01160.t01 | Wine grape | cytosol | 48.12 | 50.99 |
| TraesCS3A01G206100.1 | Wheat | cytosol | 48.12 | 50.99 |
| TraesCS3D01G209500.1 | Wheat | cytosol | 48.12 | 50.99 |
| VIT_18s0001g04800.t01 | Wine grape | cytosol, plastid | 46.88 | 50.34 |
| TraesCS2D01G285700.1 | Wheat | cytosol | 47.5 | 50.33 |
| TraesCS2B01G304100.1 | Wheat | cytosol | 47.5 | 50.33 |
| TraesCS2A01G287200.1 | Wheat | cytosol | 47.5 | 50.33 |
| HORVU3Hr1G049780.1 | Barley | cytosol | 47.5 | 50.33 |
| TraesCS3B01G238100.1 | Wheat | cytosol | 27.5 | 44.0 |
| KRH28829 | Soybean | cytosol | 33.12 | 43.8 |
| HORVU6Hr1G009000.1 | Barley | cytosol, plastid, vacuole | 56.25 | 40.0 |
| VIT_02s0025g03010.t01 | Wine grape | cytosol, mitochondrion | 30.62 | 34.51 |
| VIT_08s0040g00130.t01 | Wine grape | cytosol | 26.88 | 34.4 |
| VIT_12s0028g02190.t01 | Wine grape | cytosol | 28.12 | 30.82 |
| VIT_16s0050g00150.t01 | Wine grape | mitochondrion, plastid | 31.88 | 29.65 |
| VIT_10s0003g01220.t01 | Wine grape | cytosol | 25.62 | 28.28 |
| HORVU2Hr1G011060.1 | Barley | nucleus, plastid | 25.0 | 25.81 |
Protein Annotations
| EntrezGene:100256423 | wikigene:100256423 | EntrezGene:100261510 | wikigene:100261510 | Gene3D:3.30.70.100 | MapMan:35.1 |
| EMBL:AM441001 | ProteinID:CAN71845 | ProteinID:CAN71845.1 | ProteinID:CCB44335 | ProteinID:CCB44335.1 | UniProt:F6GWK0 |
| EMBL:FN594959 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 | GO:GO:0030001 |
| GO:GO:0046872 | GO:GO:0046914 | GO:GO:0046916 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 |
| EntrezGene:LOC100256423 | wikigene:LOC100256423 | EntrezGene:LOC100261510 | wikigene:LOC100261510 | PFAM:PF00403 | PANTHER:PTHR22814 |
| PANTHER:PTHR22814:SF14 | SUPFAM:SSF55008 | UniParc:UPI00015CE4FE | ArrayExpress:VIT_04s0023g03890 | EnsemblPlantsGene:VIT_04s0023g03890 | EnsemblPlants:VIT_04s0023g03890.t01 |
| RefSeq:XP_002272585 | RefSeq:XP_002272585.1 | RefSeq:XP_002272623 | RefSeq:XP_002272623.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr4:-:20382429..20383000
Molecular Weight (calculated)
18284.2 Da
IEP (calculated)
9.696
GRAVY (calculated)
-0.606
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MGALDYFSNL CECRSLHESR QLHKLRKLKQ LQTVEIKVKM DCEGCERQVR KSVEGMKGVT QVVLEPKLNK LTVVGYVEPK KVLHRVKHRT GKRPVMWPYV
101: PYDEIPHPYA PGVYDRKAPP GYVRNPSQDP QVSNLARASS TEVKYTTAFS DDNPNACIIM
101: PYDEIPHPYA PGVYDRKAPP GYVRNPSQDP QVSNLARASS TEVKYTTAFS DDNPNACIIM
001: MGVLDHVSEM FDCSHGHKIK KRKQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVTLEP KAHKVTVVGY VDPNKVVARM SHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM
Arabidopsis Description
HIPP26HIPP26 [Source:UniProtKB/TrEMBL;Acc:A0A178V1F5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.