Factsheet for VIT_03s0038g02440.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
peroxisome 1
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0098g01570.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38580.1	VIT_16s0098g01570.t01	AT4G27780.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60697	Soybean	cytosol	83.23	83.77
CDY65011	Canola	cytosol	81.29	82.35
Solyc01g111600.2.1	Tomato	nucleus	81.29	82.35
Bra033570.1-P	Field mustard	cytosol	81.29	82.35
PGSC0003DMT400015784	Potato	cytosol	80.65	81.7
CDX90282	Canola	cytosol	80.65	81.7
Bra010738.1-P	Field mustard	cytosol	80.65	81.7
AT4G38580.1	Thale cress	cytosol	80.0	81.05
CDY12089	Canola	cytosol	79.35	80.39
CDX72748	Canola	cytosol	78.71	79.74
KRH29001	Soybean	cytosol	78.06	77.56
VIT_04s0023g03910.t01	Wine grape	cytosol	58.06	74.38
AT4G35060.1	Thale cress	cytosol	70.97	71.9
GSMUA_Achr4P25770_001	Banana	cytosol, plastid	71.61	71.61
CDX76309	Canola	cytosol	70.97	71.43
Bra034669.1-P	Field mustard	cytosol	70.97	71.43
CDY52653	Canola	cytosol	70.32	71.24
Bra011581.1-P	Field mustard	cytosol	70.32	71.24
CDY17504	Canola	cytosol	70.32	70.78
VIT_04s0023g03890.t01	Wine grape	cytosol	72.9	70.62
CDX69108	Canola	cytosol	69.68	70.59
GSMUA_Achr1P02370_001	Banana	cytosol, plastid	70.32	70.32
KRH24318	Soybean	cytosol, nucleus, plastid	38.71	69.77
TraesCS2D01G063000.1	Wheat	cytosol, plastid	66.45	66.45
TraesCS2B01G077100.1	Wheat	cytosol, plastid	66.45	66.45
Zm00001d004138_P001	Maize	cytosol	65.81	65.81
TraesCS2A01G064900.1	Wheat	nucleus	65.16	65.16
EES11880	Sorghum	cytosol	65.16	65.16
Os04t0244800-01	Rice	plasma membrane	64.52	64.52
TraesCS6B01G059000.1	Wheat	cytosol	65.16	63.52
TraesCS6A01G043000.1	Wheat	cytosol	65.16	63.52
TraesCS6D01G049600.1	Wheat	cytosol	64.52	62.89
Os03t0156600-01	Rice	cytosol	60.0	60.0
HORVU7Hr1G090970.1	Barley	mitochondrion	60.65	59.12
TraesCS7B01G285400.1	Wheat	mitochondrion, plastid	61.29	59.01
TraesCS7A01G382700.1	Wheat	mitochondrion, plastid	61.29	59.01
TraesCS7D01G379100.1	Wheat	mitochondrion, plastid	60.0	57.76
VIT_07s0031g01160.t01	Wine grape	cytosol	55.48	56.95
VIT_01s0011g04700.t01	Wine grape	cytosol	53.55	56.46
EER92834	Sorghum	cytosol	56.77	56.41
Zm00001d027720_P001	Maize	cytosol	55.48	55.13
VIT_18s0001g04800.t01	Wine grape	cytosol, plastid	52.9	55.03
VIT_14s0006g01800.t01	Wine grape	cytosol	51.61	54.79
EES14354	Sorghum	cytosol	52.9	54.3
Zm00001d034978_P001	Maize	cytosol	52.9	54.3
TraesCS5A01G244000.1	Wheat	cytosol	51.61	52.63
TraesCS5D01G250700.1	Wheat	cytosol	51.61	52.63
Os01t0507700-01	Rice	plasma membrane	50.97	52.32
TraesCS2D01G285700.1	Wheat	cytosol	50.97	52.32
TraesCS2B01G304100.1	Wheat	cytosol	50.97	52.32
TraesCS2A01G287200.1	Wheat	cytosol	50.97	52.32
HORVU5Hr1G069380.2	Barley	cytosol	50.97	51.97
TraesCS5B01G242000.1	Wheat	cytosol	50.97	51.97
Zm00001d052760_P001	Maize	cytosol	50.32	51.66
TraesCS3D01G209500.1	Wheat	cytosol	49.68	50.99
TraesCS3A01G206100.1	Wheat	cytosol	49.68	50.99
HORVU3Hr1G049780.1	Barley	cytosol	49.03	50.33
TraesCS3B01G238100.1	Wheat	cytosol	28.39	44.0
HORVU6Hr1G009000.1	Barley	cytosol, plastid, vacuole	63.23	43.56
VIT_08s0040g00130.t01	Wine grape	cytosol	31.61	39.2
VIT_02s0025g03010.t01	Wine grape	cytosol, mitochondrion	30.97	33.8
VIT_10s0003g01220.t01	Wine grape	cytosol	31.61	33.79
VIT_12s0028g02190.t01	Wine grape	cytosol	29.03	30.82
VIT_16s0050g00150.t01	Wine grape	mitochondrion, plastid	31.61	28.49
HORVU2Hr1G011060.1	Barley	nucleus, plastid	28.39	28.39

Protein Annotations

EntrezGene:100260571	wikigene:100260571	Gene3D:3.30.70.100	MapMan:35.1	UniProt:A5C6S4	EMBL:AM484278
ProteinID:CAN62146	ProteinID:CAN62146.1	ProteinID:CBI37869	ProteinID:CBI37869.3	EMBL:FN596508	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0009506	GO:GO:0009987	GO:GO:0019725	GO:GO:0030001	GO:GO:0046872
GO:GO:0046914	GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	EntrezGene:LOC100260571
wikigene:LOC100260571	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF14	SUPFAM:SSF55008
TIGR:TC58296	TIGR:TC63247	UniParc:UPI0001522C4E	ArrayExpress:VIT_03s0038g02440	EnsemblPlantsGene:VIT_03s0038g02440	EnsemblPlants:VIT_03s0038g02440.t01
RefSeq:XP_002278879	RefSeq:XP_002278879.1	RefSeq:XP_003631570	RefSeq:XP_003631570.1	:	:

Description

No Description!

Coordinates

chr3:-:1691698..1692972

Molecular Weight (calculated)

17310.8 Da

IEP (calculated)

9.500

GRAVY (calculated)

-0.490

Length

155 amino acids

Sequence
(BLAST)

001: MGALDHVSHL FDCSHGSSKL KRRKQLQTVE IKVKMDCEGC ERKVRRAVEG MKGVTQVDVV PKHHKLTVVG YVDPAKVVSR VAHRTGKKAE LWPYVPYDVV
101: AHPYAPGVYD KKAPPGYVRN AYEDPQYSHL ARASSTEVRY TTAFSDENPA ACAIM

Best Arabidopsis Sequence Match ( AT4G38580.2 )
(BLAST)

001: MGVLDHVSEM FDCSHGHKIK KRKQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVTLEP KAHKVTVVGY VDPNKVVARM SHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM

Arabidopsis Description

HIPP26HIPP26 [Source:UniProtKB/TrEMBL;Acc:A0A178V1F5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.