Factsheet for Bra033570.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004399.1-P
Bra007869.1-P
Bra019027.1-P
Bra026307.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38580.1	Bra004399.1-P	AT1G69600.1	18974936
AT4G38580.1	Bra007869.1-P	AT1G69600.1	18974936
AT4G38580.1	Bra019027.1-P	AT4G27780.1	18823312
AT4G38580.1	Bra026307.1-P	AT4G27780.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65011	Canola	cytosol	100.0	100.0
Bra010738.1-P	Field mustard	cytosol	98.04	98.04
CDX72748	Canola	cytosol	96.73	96.73
AT4G38580.1	Thale cress	cytosol	96.08	96.08
Solyc01g111600.2.1	Tomato	nucleus	84.97	84.97
PGSC0003DMT400015784	Potato	cytosol	84.31	84.31
VIT_03s0038g02440.t01	Wine grape	cytosol	82.35	81.29
Bra011581.1-P	Field mustard	cytosol	73.2	73.2
GSMUA_Achr4P25770_001	Banana	cytosol, plastid	73.2	72.26
Bra034669.1-P	Field mustard	cytosol	71.24	70.78
Bra009662.1-P	Field mustard	cytosol	55.56	70.25
GSMUA_Achr1P02370_001	Banana	cytosol, plastid	69.28	68.39
TraesCS2D01G063000.1	Wheat	cytosol, plastid	65.36	64.52
TraesCS2B01G077100.1	Wheat	cytosol, plastid	65.36	64.52
TraesCS2A01G064900.1	Wheat	nucleus	65.36	64.52
Zm00001d004138_P001	Maize	cytosol	65.36	64.52
EES11880	Sorghum	cytosol	65.36	64.52
Os04t0244800-01	Rice	plasma membrane	64.71	63.87
TraesCS6A01G043000.1	Wheat	cytosol	63.4	61.01
TraesCS6B01G059000.1	Wheat	cytosol	63.4	61.01
TraesCS6D01G049600.1	Wheat	cytosol	62.75	60.38
Os03t0156600-01	Rice	cytosol	58.82	58.06
EER92834	Sorghum	cytosol	57.52	56.41
Bra016162.1-P	Field mustard	cytosol	54.25	55.33
TraesCS7B01G285400.1	Wheat	mitochondrion, plastid	58.17	55.28
TraesCS7A01G382700.1	Wheat	mitochondrion, plastid	58.17	55.28
HORVU7Hr1G090970.1	Barley	mitochondrion	56.86	54.72
TraesCS7D01G379100.1	Wheat	mitochondrion, plastid	56.86	54.04
Zm00001d027720_P001	Maize	cytosol	54.9	53.85
Bra012353.1-P	Field mustard	cytosol	52.29	52.63
Bra024556.1-P	Field mustard	cytosol	49.67	51.7
Os01t0507700-01	Rice	plasma membrane	50.98	51.66
Zm00001d034978_P001	Maize	cytosol	50.33	50.99
EES14354	Sorghum	cytosol	50.33	50.99
TraesCS2A01G287200.1	Wheat	cytosol	49.67	50.33
TraesCS2B01G304100.1	Wheat	cytosol	49.67	50.33
TraesCS2D01G285700.1	Wheat	cytosol	49.67	50.33
TraesCS5D01G250700.1	Wheat	cytosol	49.02	49.34
TraesCS5A01G244000.1	Wheat	cytosol	49.02	49.34
TraesCS3A01G206100.1	Wheat	cytosol	48.37	49.01
HORVU5Hr1G069380.2	Barley	cytosol	48.37	48.68
TraesCS5B01G242000.1	Wheat	cytosol	48.37	48.68
TraesCS3D01G209500.1	Wheat	cytosol	47.71	48.34
HORVU3Hr1G049780.1	Barley	cytosol	47.71	48.34
Zm00001d052760_P001	Maize	cytosol	47.71	48.34
Bra013976.1-P	Field mustard	cytosol	45.75	46.98
Bra011840.1-P	Field mustard	cytosol	48.37	46.84
Bra023619.1-P	Field mustard	cytosol	45.1	46.31
Bra037865.1-P	Field mustard	cytosol	43.79	44.67
TraesCS3B01G238100.1	Wheat	cytosol	28.1	43.0
HORVU6Hr1G009000.1	Barley	cytosol, plastid, vacuole	61.44	41.78
Bra018022.1-P	Field mustard	cytosol	30.07	33.33
Bra007280.1-P	Field mustard	cytosol	32.03	31.01
Bra014664.1-P	Field mustard	cytosol	26.8	30.37
Bra030119.1-P	Field mustard	cytosol	27.45	29.79
HORVU2Hr1G011060.1	Barley	nucleus, plastid	28.76	28.39
Bra032428.1-P	Field mustard	cytosol	28.1	27.56
Bra037919.1-P	Field mustard	plastid	32.68	27.47
Bra028528.1-P	Field mustard	cytosol	30.07	25.84

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	EnsemblPlantsGene:Bra033570	EnsemblPlants:Bra033570.1	EnsemblPlants:Bra033570.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom
InterPro:HMA_dom_sf	InterPro:IPR006121	UniProt:M4EXN3	PFAM:PF00403	PANTHER:PTHR22814	PANTHER:PTHR22814:SF14
SUPFAM:SSF55008	UniParc:UPI000253F94D	:	:	:	:

Description

AT4G38580 (E=3e-084) ATFP6, HIPP26 | ATFP6 (FARNESYLATED PROTEIN 6); metal ion binding

Coordinates

chrA06:-:26180908..26181860

Molecular Weight (calculated)

17024.5 Da

IEP (calculated)

9.575

GRAVY (calculated)

-0.441

Length

153 amino acids

Sequence
(BLAST)

001: MGVLDHVSEM FDCSHGHKIK KRRQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVSLEP KAHKVTVVGY VDPNKVVSRM AHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRA DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VLM

Best Arabidopsis Sequence Match ( AT4G38580.2 )
(BLAST)

001: MGVLDHVSEM FDCSHGHKIK KRKQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVTLEP KAHKVTVVGY VDPNKVVARM SHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM

Arabidopsis Description

HIPP26HIPP26 [Source:UniProtKB/TrEMBL;Acc:A0A178V1F5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.