Factsheet for Bra030119.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57455	Canola	cytosol	98.58	98.58
CDX94648	Canola	cytosol	98.58	98.58
AT1G29100.2	Thale cress	cytosol	78.72	75.51
Bra032428.1-P	Field mustard	cytosol	42.55	38.46
TraesCS7A01G345500.1	Wheat	cytosol	41.13	35.37
Bra014664.1-P	Field mustard	cytosol	33.33	34.81
TraesCS7B01G237800.1	Wheat	cytosol	41.13	34.12
HORVU7Hr1G080490.1	Barley	cytosol	41.13	33.53
TraesCS7D01G333800.1	Wheat	cytosol	40.43	33.33
Bra018022.1-P	Field mustard	cytosol	32.62	33.33
Bra009662.1-P	Field mustard	cytosol	28.37	33.06
Zm00001d046169_P001	Maize	cytosol	41.13	32.04
Os06t0542300-01	Rice	cytosol	41.13	31.69
Bra011840.1-P	Field mustard	cytosol	34.04	30.38
Bra007280.1-P	Field mustard	cytosol	34.04	30.38
Bra037865.1-P	Field mustard	cytosol	31.91	30.0
Bra016162.1-P	Field mustard	cytosol	31.91	30.0
Bra011581.1-P	Field mustard	cytosol	31.91	29.41
Bra034669.1-P	Field mustard	cytosol	31.91	29.22
EER89887	Sorghum	cytosol	41.13	28.71
Bra024556.1-P	Field mustard	cytosol	29.79	28.57
Bra010738.1-P	Field mustard	cytosol	30.5	28.1
Bra033570.1-P	Field mustard	cytosol	29.79	27.45
Bra012353.1-P	Field mustard	cytosol	29.08	26.97
Bra013976.1-P	Field mustard	cytosol	28.37	26.85
Bra023619.1-P	Field mustard	cytosol	27.66	26.17
Bra028528.1-P	Field mustard	cytosol	32.62	25.84
Bra037919.1-P	Field mustard	plastid	30.5	23.63

Protein Annotations

EnsemblPlants:Bra030119.1	EnsemblPlants:Bra030119.1-P	EnsemblPlantsGene:Bra030119	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF107	PFAM:PF00403	PFscan:PS50846	SEG:seg
SUPFAM:SSF55008	UniParc:UPI00025410A4	UniProt:M4EMU9	MapMan:35.1	:	:

Description

AT1G29100 (E=5e-048) | copper-binding family protein

Coordinates

chrA07:-:6415793..6416351

Molecular Weight (calculated)

16418.5 Da

IEP (calculated)

8.695

GRAVY (calculated)

-0.931

Length

141 amino acids

Sequence
(BLAST)

001: MDVPMDCPGC ERKVRKALES IKGVHDVQID MNQQKVTVTG SAEQKKVLKV ARSITGREVC LWSCPYHPES NGFNDKYYKK KFRKRIIMSK NGEKVNSYNY
101: YMHGYHGHDH GYHQERPYSG HIDENATSMF SEENPHFCNI M

Best Arabidopsis Sequence Match ( AT1G29100.2 )
(BLAST)

001: MTTVVEMEVP MDCPGCENKV RKALEKMNGV HDVQIDIKQQ RVTVTGSAEQ KKVLKVARNV TKRDICLWSY PYHPESNGYN DRYFKKKFRK RINMSVNGEK
101: VSSYNYHKHG YHGHEHGYYQ ERPYSGLINP SASSMFSEEN PHFCSIM

Arabidopsis Description

Heavy metal transport/detoxification superfamily protein [Source:TAIR;Acc:AT1G29100]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.