Factsheet for Bra028528.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004399.1-P
Bra007869.1-P
Bra008712.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18196.1	Bra004399.1-P	AT1G69600.1	18974936
AT2G18196.1	Bra007869.1-P	AT1G69600.1	18974936
AT2G18196.1	Bra008712.1-P	AT5G15210.1	18974936

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67533	Canola	cytosol	100.0	100.0
CDY13354	Canola	cytosol	100.0	100.0
AT2G18196.1	Thale cress	plastid	92.7	92.7
VIT_02s0025g03010.t01	Wine grape	cytosol, mitochondrion	61.8	77.46
PGSC0003DMT400079287	Potato	cytosol	39.89	73.2
KRG92555	Soybean	cytosol	67.98	67.98
GSMUA_Achr11P...	Banana	cytosol	50.0	67.42
KRH34236	Soybean	cytosol	67.42	67.42
Solyc08g075880.2.1	Tomato	endoplasmic reticulum, plastid	64.61	64.25
PGSC0003DMT400079324	Potato	endoplasmic reticulum	64.61	63.89
Bra037919.1-P	Field mustard	plastid	62.36	60.99
GSMUA_Achr11P...	Banana	cytosol	58.99	56.76
Os03t0120400-01	Rice	plastid	60.67	55.96
TraesCS4D01G343300.1	Wheat	plastid	59.55	54.36
TraesCS4B01G348900.1	Wheat	plastid	59.55	54.36
TraesCS5A01G516900.1	Wheat	plastid	59.55	54.36
GSMUA_Achr1P00790_001	Banana	cytosol	58.43	53.06
GSMUA_Achr2P10220_001	Banana	mitochondrion, plastid	56.74	52.88
EER92967	Sorghum	plastid	57.3	52.58
Zm00001d027405_P001	Maize	plastid	55.62	51.03
Os10t0537400-00	Rice	cytosol	46.63	44.86
KXG39011	Sorghum	cytosol	46.63	39.9
TraesCS1D01G204100.1	Wheat	cytosol, plastid	43.26	39.09
TraesCS1B01G215100.1	Wheat	cytosol, plastid	43.26	39.09
TraesCS1A01G200700.1	Wheat	cytosol, plastid	42.7	38.97
Bra023619.1-P	Field mustard	cytosol	32.58	38.93
Bra013976.1-P	Field mustard	cytosol	31.46	37.58
HORVU4Hr1G085090.2	Barley	plastid	58.99	36.71
Bra014664.1-P	Field mustard	cytosol	27.53	36.3
Bra018022.1-P	Field mustard	cytosol	28.09	36.23
Bra016162.1-P	Field mustard	cytosol	30.34	36.0
Bra007280.1-P	Field mustard	cytosol	30.34	34.18
Bra024556.1-P	Field mustard	cytosol	28.09	34.01
Bra032428.1-P	Field mustard	cytosol	29.78	33.97
Bra011840.1-P	Field mustard	cytosol	29.78	33.54
Bra012353.1-P	Field mustard	cytosol	28.09	32.89
Bra030119.1-P	Field mustard	cytosol	25.84	32.62
Bra033570.1-P	Field mustard	cytosol	25.84	30.07
Bra010738.1-P	Field mustard	cytosol	25.84	30.07
Bra009662.1-P	Field mustard	cytosol	20.22	29.75
Bra037865.1-P	Field mustard	cytosol	24.72	29.33
Bra011581.1-P	Field mustard	cytosol	23.6	27.45
Bra034669.1-P	Field mustard	cytosol	22.47	25.97

Protein Annotations

EnsemblPlants:Bra028528.1	EnsemblPlants:Bra028528.1-P	EnsemblPlantsGene:Bra028528	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF280	PFAM:PF00403	PFscan:PS50846	SUPFAM:SSF55008
UniParc:UPI00025433FF	UniProt:M4EIB3	MapMan:35.1	:	:	:

Description

AT2G18196 (E=1e-096) | metal ion binding

Coordinates

chrA02:-:881927..883125

Molecular Weight (calculated)

20938.2 Da

IEP (calculated)

10.037

GRAVY (calculated)

-0.611

Length

178 amino acids

Sequence
(BLAST)

001: MGLRSIISTI TYGLFLGYPH KKPKVKSVSH LNYYHTMPKA RPLSLQTIDL KVRMCCSGCE RVVKHAIYKL RGVDSVEVNL ELERVTVVGY VERKKVLKAV
101: RRAGKRAEFW PYPDMPRYFT SSDHYFKDTT REFRESYNYY RHGYNLSDRH GHIHVTNRGD DKVSNFFNDD NVHACRLM

Best Arabidopsis Sequence Match ( AT2G18196.1 )
(BLAST)

001: MGFGSFISTI TYCLFFRYPH KKPKFKSVSH LNHYHTMPMA RPLSLQTIDL KVRMCCSGCE RVVKHAIYKL RGVDSVEVNL EMERVTVVGY VERKKVLKAV
101: RRAGKRAEFW PYPDMPRYFT SSDHYFKDTT REFRESYNYY RHGYNLSDRH GNIHVTNRGD DKMSNFFNDD NVHACSLM

Arabidopsis Description

HIPP30Heavy metal-associated isoprenylated plant protein 30 [Source:UniProtKB/Swiss-Prot;Acc:F4IQG4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.