Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- nucleus 1
- mitochondrion 1
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400080288 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G18196.1 | PGSC0003DMT400080288 | AT5G15210.1 | 18974936 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079287 | Potato | cytosol | 53.89 | 100.0 |
| Solyc08g075880.2.1 | Tomato | endoplasmic reticulum, plastid | 97.22 | 97.77 |
| VIT_02s0025g03010.t01 | Wine grape | cytosol, mitochondrion | 63.89 | 80.99 |
| GSMUA_Achr11P... | Banana | cytosol | 52.78 | 71.97 |
| AT2G18196.1 | Thale cress | plastid | 66.11 | 66.85 |
| KRH34236 | Soybean | cytosol | 66.11 | 66.85 |
| KRG92555 | Soybean | cytosol | 65.56 | 66.29 |
| Bra028528.1-P | Field mustard | cytosol | 63.89 | 64.61 |
| CDX67533 | Canola | cytosol | 63.89 | 64.61 |
| CDY13354 | Canola | cytosol | 63.89 | 64.61 |
| PGSC0003DMT400012844 | Potato | plastid | 63.33 | 61.96 |
| CDX86861 | Canola | plastid | 59.44 | 58.79 |
| CDX99542 | Canola | plastid | 59.44 | 58.79 |
| Bra037919.1-P | Field mustard | plastid | 58.89 | 58.24 |
| AT4G10465.1 | Thale cress | plastid | 58.89 | 57.92 |
| Os03t0120400-01 | Rice | plastid | 61.11 | 56.99 |
| GSMUA_Achr11P... | Banana | cytosol | 57.78 | 56.22 |
| EER92967 | Sorghum | plastid | 59.44 | 55.15 |
| TraesCS5A01G516900.1 | Wheat | plastid | 58.89 | 54.36 |
| TraesCS4D01G343300.1 | Wheat | plastid | 58.89 | 54.36 |
| TraesCS4B01G348900.1 | Wheat | plastid | 58.89 | 54.36 |
| Zm00001d027405_P001 | Maize | plastid | 58.33 | 54.12 |
| GSMUA_Achr1P00790_001 | Banana | cytosol | 58.33 | 53.57 |
| CDX85985 | Canola | mitochondrion | 35.56 | 53.33 |
| GSMUA_Achr2P10220_001 | Banana | mitochondrion, plastid | 56.11 | 52.88 |
| Os10t0537400-00 | Rice | cytosol | 47.22 | 45.95 |
| KXG39011 | Sorghum | cytosol | 50.0 | 43.27 |
| TraesCS1B01G215100.1 | Wheat | cytosol, plastid | 42.78 | 39.09 |
| TraesCS1A01G200700.1 | Wheat | cytosol, plastid | 42.22 | 38.97 |
| TraesCS1D01G204100.1 | Wheat | cytosol, plastid | 42.22 | 38.58 |
| PGSC0003DMT400078635 | Potato | cytosol, plastid | 31.11 | 37.84 |
| HORVU4Hr1G085090.2 | Barley | plastid | 58.89 | 37.06 |
| PGSC0003DMT400026532 | Potato | cytosol | 22.22 | 37.04 |
| PGSC0003DMT400043033 | Potato | cytosol | 31.67 | 36.08 |
| PGSC0003DMT400015350 | Potato | cytosol | 28.33 | 34.69 |
| PGSC0003DMT400056666 | Potato | cytosol | 28.89 | 34.21 |
| PGSC0003DMT400037204 | Potato | cytosol | 26.11 | 33.81 |
| PGSC0003DMT400056199 | Potato | cytosol | 28.89 | 33.77 |
| PGSC0003DMT400015784 | Potato | cytosol | 28.33 | 33.33 |
| PGSC0003DMT400009390 | Potato | cytosol | 28.89 | 32.7 |
| PGSC0003DMT400024479 | Potato | cytosol, plastid | 24.44 | 29.33 |
| PGSC0003DMT400024481 | Potato | cytosol, plastid | 24.44 | 29.33 |
| PGSC0003DMT400052612 | Potato | cytosol, mitochondrion, nucleus | 18.33 | 28.7 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400079324 | EnsemblPlantsGene:PGSC0003DMG400030875 | EntrezGene:102581614 | Gene3D:3.30.70.100 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf |
| InterPro:IPR006121 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF280 | PFAM:PF00403 | PFscan:PS50846 | PGSC:PGSC0003DMG400030875 |
| RefSeq:XP_006364470.1 | SUPFAM:SSF55008 | UniParc:UPI000295E6DB | UniProt:M1D1M1 | MapMan:35.1 | : |
Description
Metal ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030875]
Coordinates
chr8:-:48216723..48218378
Molecular Weight (calculated)
20957.0 Da
IEP (calculated)
9.139
GRAVY (calculated)
-0.572
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNVLEKLFG SFVSAITSYC VFQYHHPHHQ QGTNKHKMTK ATRPLSLQTV ELKVRMCCSG CERVIKDAVY KLRGVESVSV ELEMEKVTVV GYVDRNRVLK
101: AVRRHGKRAE FWPYPNPPLY FTTSNNYFKD MTSEYRDSYN YWRHGYNVAD KHGNLHVTHR GDDKVSNLFN DDNVNACCLM
101: AVRRHGKRAE FWPYPNPPLY FTTSNNYFKD MTSEYRDSYN YWRHGYNVAD KHGNLHVTHR GDDKVSNLFN DDNVNACCLM
001: MGFGSFISTI TYCLFFRYPH KKPKFKSVSH LNHYHTMPMA RPLSLQTIDL KVRMCCSGCE RVVKHAIYKL RGVDSVEVNL EMERVTVVGY VERKKVLKAV
101: RRAGKRAEFW PYPDMPRYFT SSDHYFKDTT REFRESYNYY RHGYNLSDRH GNIHVTNRGD DKMSNFFNDD NVHACSLM
101: RRAGKRAEFW PYPDMPRYFT SSDHYFKDTT REFRESYNYY RHGYNLSDRH GNIHVTNRGD DKMSNFFNDD NVHACSLM
Arabidopsis Description
HIPP30Heavy metal-associated isoprenylated plant protein 30 [Source:UniProtKB/Swiss-Prot;Acc:F4IQG4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.