Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g007630.1.1 | Tomato | cytosol | 99.32 | 99.32 |
| KRG90986 | Soybean | cytosol, plastid | 67.35 | 67.81 |
| KRH35768 | Soybean | cytosol, plastid | 67.35 | 67.81 |
| PGSC0003DMT400078635 | Potato | cytosol, plastid | 63.95 | 63.51 |
| KRH38224 | Soybean | cytosol | 63.27 | 63.27 |
| GSMUA_Achr2P07910_001 | Banana | cytosol | 63.95 | 62.25 |
| GSMUA_Achr1P12840_001 | Banana | cytosol | 61.9 | 60.26 |
| PGSC0003DMT400056666 | Potato | cytosol | 57.14 | 55.26 |
| PGSC0003DMT400015784 | Potato | cytosol | 57.14 | 54.9 |
| PGSC0003DMT400056199 | Potato | cytosol | 55.78 | 53.25 |
| PGSC0003DMT400024481 | Potato | cytosol, plastid | 52.38 | 51.33 |
| PGSC0003DMT400043033 | Potato | cytosol | 55.1 | 51.27 |
| PGSC0003DMT400024479 | Potato | cytosol, plastid | 51.02 | 50.0 |
| PGSC0003DMT400009390 | Potato | cytosol | 51.02 | 47.17 |
| PGSC0003DMT400037204 | Potato | cytosol | 34.01 | 35.97 |
| PGSC0003DMT400052612 | Potato | cytosol, mitochondrion, nucleus | 23.81 | 30.43 |
| PGSC0003DMT400026532 | Potato | cytosol | 21.77 | 29.63 |
| PGSC0003DMT400079287 | Potato | cytosol | 19.05 | 28.87 |
| PGSC0003DMT400079324 | Potato | endoplasmic reticulum | 34.69 | 28.33 |
| PGSC0003DMT400012844 | Potato | plastid | 34.01 | 27.17 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400015350 | EnsemblPlantsGene:PGSC0003DMG400005988 | EntrezGene:102581483 | Gene3D:3.30.70.100 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf |
| InterPro:IPR006121 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF176 | PFAM:PF00403 | PFscan:PS50846 | PGSC:PGSC0003DMG400005988 |
| RefSeq:XP_006360417.1 | SUPFAM:SSF55008 | UniParc:UPI000296F9A1 | UniProt:M1A5W3 | MapMan:35.1 | : |
Description
Metal ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005988]
Coordinates
chr4:+:2063369..2064790
Molecular Weight (calculated)
16607.0 Da
IEP (calculated)
9.964
GRAVY (calculated)
-0.585
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIIDHISDM FEITSTRKSK RKPMQTVEIK VKMDCDGCER KVTNAVSSIK GVKSVDVSRK QSKVTVSGYI EPKKVLKRVQ NTGKKAEFWP YVEYNLVSYP
101: YAIGAYDKKA PSGYVRDVPQ AFQTPNTPTQ RLTSMFSDEN PNACQIM
101: YAIGAYDKKA PSGYVRDVPQ AFQTPNTPTQ RLTSMFSDEN PNACQIM
001: MGALDSLSEY ISDYFRVTRK RRKRKVMQTV NIKVKMDCDG CERRVKNAVS SMKGVKSVEV NRKIHKVTVS GYVEPKKVLK RIERTGKKAE IWPYVPYNMV
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
Arabidopsis Description
HIPP20HIPP20 [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y0]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.