Factsheet for PGSC0003DMT400015784

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
peroxisome 1
plasma membrane 1
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400047661

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38580.1	PGSC0003DMT400047661	AT4G27780.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111600.2.1	Tomato	nucleus	98.69	98.69
AT4G38580.1	Thale cress	cytosol	86.27	86.27
Bra010738.1-P	Field mustard	cytosol	84.31	84.31
Bra033570.1-P	Field mustard	cytosol	84.31	84.31
CDY65011	Canola	cytosol	84.31	84.31
CDX90282	Canola	cytosol	84.31	84.31
CDY12089	Canola	cytosol	83.01	83.01
CDX72748	Canola	cytosol	82.35	82.35
VIT_03s0038g02440.t01	Wine grape	cytosol	81.7	80.65
KRH60697	Soybean	cytosol	79.74	79.22
GSMUA_Achr4P25770_001	Banana	cytosol, plastid	73.86	72.9
KRH29001	Soybean	cytosol	73.2	71.79
CDY52653	Canola	cytosol	70.59	70.59
Bra011581.1-P	Field mustard	cytosol	70.59	70.59
CDX69108	Canola	cytosol	69.93	69.93
AT4G35060.1	Thale cress	cytosol	69.93	69.93
PGSC0003DMT400009390	Potato	cytosol	72.55	69.81
GSMUA_Achr1P02370_001	Banana	cytosol, plastid	69.28	68.39
CDX76309	Canola	cytosol	68.63	68.18
Bra034669.1-P	Field mustard	cytosol	68.63	68.18
CDY17504	Canola	cytosol	67.97	67.53
TraesCS2D01G063000.1	Wheat	cytosol, plastid	66.01	65.16
TraesCS2B01G077100.1	Wheat	cytosol, plastid	66.01	65.16
EES11880	Sorghum	cytosol	64.71	63.87
Zm00001d004138_P001	Maize	cytosol	64.71	63.87
TraesCS2A01G064900.1	Wheat	nucleus	64.71	63.87
Os04t0244800-01	Rice	plasma membrane	64.05	63.23
KRH24318	Soybean	cytosol, nucleus, plastid	35.29	62.79
TraesCS6D01G049600.1	Wheat	cytosol	62.09	59.75
TraesCS6B01G059000.1	Wheat	cytosol	62.09	59.75
TraesCS6A01G043000.1	Wheat	cytosol	62.09	59.75
Os03t0156600-01	Rice	cytosol	59.48	58.71
PGSC0003DMT400015350	Potato	cytosol	54.9	57.14
EER92834	Sorghum	cytosol	56.86	55.77
Zm00001d027720_P001	Maize	cytosol	55.56	54.49
Os01t0507700-01	Rice	plasma membrane	52.94	53.64
Zm00001d034978_P001	Maize	cytosol	52.29	52.98
EES14354	Sorghum	cytosol	52.29	52.98
HORVU7Hr1G090970.1	Barley	mitochondrion	54.9	52.83
TraesCS7A01G382700.1	Wheat	mitochondrion, plastid	55.56	52.8
TraesCS7B01G285400.1	Wheat	mitochondrion, plastid	55.56	52.8
TraesCS7D01G379100.1	Wheat	mitochondrion, plastid	54.25	51.55
PGSC0003DMT400078635	Potato	cytosol, plastid	49.67	51.35
TraesCS2D01G285700.1	Wheat	cytosol	50.33	50.99
TraesCS2B01G304100.1	Wheat	cytosol	50.33	50.99
TraesCS2A01G287200.1	Wheat	cytosol	50.33	50.99
PGSC0003DMT400024481	Potato	cytosol, plastid	49.67	50.67
TraesCS5A01G244000.1	Wheat	cytosol	50.33	50.66
TraesCS5D01G250700.1	Wheat	cytosol	50.33	50.66
Zm00001d052760_P001	Maize	cytosol	49.67	50.33
TraesCS3A01G206100.1	Wheat	cytosol	49.67	50.33
TraesCS3D01G209500.1	Wheat	cytosol	49.67	50.33
PGSC0003DMT400056666	Potato	cytosol	49.67	50.0
TraesCS5B01G242000.1	Wheat	cytosol	49.67	50.0
HORVU5Hr1G069380.2	Barley	cytosol	49.67	50.0
HORVU3Hr1G049780.1	Barley	cytosol	49.02	49.67
PGSC0003DMT400056199	Potato	cytosol	49.67	49.35
PGSC0003DMT400024479	Potato	cytosol, plastid	48.37	49.33
PGSC0003DMT400043033	Potato	cytosol	45.1	43.67
TraesCS3B01G238100.1	Wheat	cytosol	28.1	43.0
HORVU6Hr1G009000.1	Barley	cytosol, plastid, vacuole	59.48	40.44
PGSC0003DMT400037204	Potato	cytosol	29.41	32.37
PGSC0003DMT400079287	Potato	cytosol	18.95	29.9
PGSC0003DMT400079324	Potato	endoplasmic reticulum	33.33	28.33
PGSC0003DMT400052612	Potato	cytosol, mitochondrion, nucleus	20.91	27.83
HORVU2Hr1G011060.1	Barley	nucleus, plastid	28.1	27.74
PGSC0003DMT400012844	Potato	plastid	32.03	26.63
PGSC0003DMT400026532	Potato	cytosol	17.65	25.0

Protein Annotations

EntrezGene:102600301	Gene3D:3.30.70.100	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005507
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150
GO:GO:0009506	GO:GO:0009628	GO:GO:0010286	GO:GO:0016020	GO:GO:0030001	GO:GO:0032791
GO:GO:0046870	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	UniProt:M1A6K9
PFAM:PF00403	EnsemblPlantsGene:PGSC0003DMG400006170	PGSC:PGSC0003DMG400006170	EnsemblPlants:PGSC0003DMT400015784	PFscan:PS50846	PANTHER:PTHR22814
PANTHER:PTHR22814:SF14	SUPFAM:SSF55008	UniParc:UPI000294F9C0	RefSeq:XP_006359700.1	:	:

Description

farnesylated protein 6 [Source:Projected from Arabidopsis thaliana (AT4G38580) TAIR;Acc:AT4G38580]

Coordinates

chr1:-:87577228..87580997

Molecular Weight (calculated)

17286.7 Da

IEP (calculated)

9.374

GRAVY (calculated)

-0.578

Length

153 amino acids

Sequence
(BLAST)

001: MGVLDHISDM FDCSSQHSKH KRRKQLQTVE IKVKMDCEGC ERKVRRSVEG MKGVSSVTIE PKQHKLTVVG YVDPEKVVAR VAHRTGKKAE IWPYVPYDVV
101: AHPYAQGVYD KKAPAGYVRR DDFQTNQLAR ASSTEVRYTT AFSDENPAAC VVM

Best Arabidopsis Sequence Match ( AT4G38580.2 )
(BLAST)

001: MGVLDHVSEM FDCSHGHKIK KRKQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVTLEP KAHKVTVVGY VDPNKVVARM SHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM

Arabidopsis Description

HIPP26HIPP26 [Source:UniProtKB/TrEMBL;Acc:A0A178V1F5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.