Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25951496
|
gfp PMID:
25951496
doi
State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Science, Northwest A&F University, Yangling, Shaanxi, China., State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2D01G063000.1 | Wheat | cytosol, plastid | 98.06 | 98.06 |
TraesCS2B01G077100.1 | Wheat | cytosol, plastid | 98.06 | 98.06 |
Os04t0244800-01 | Rice | plasma membrane | 91.61 | 91.61 |
EES11880 | Sorghum | cytosol | 90.32 | 90.32 |
Zm00001d004138_P001 | Maize | cytosol | 89.03 | 89.03 |
TraesCS6A01G043000.1 | Wheat | cytosol | 76.77 | 74.84 |
GSMUA_Achr4P25770_001 | Banana | cytosol, plastid | 72.9 | 72.9 |
GSMUA_Achr1P02370_001 | Banana | cytosol, plastid | 70.97 | 70.97 |
TraesCS7A01G382700.1 | Wheat | mitochondrion, plastid | 70.32 | 67.7 |
Bra009662.1-P | Field mustard | cytosol | 52.26 | 66.94 |
AT4G38580.1 | Thale cress | cytosol | 65.81 | 66.67 |
KRH60697 | Soybean | cytosol | 65.16 | 65.58 |
CDX90282 | Canola | cytosol | 64.52 | 65.36 |
Bra033570.1-P | Field mustard | cytosol | 64.52 | 65.36 |
Bra010738.1-P | Field mustard | cytosol | 64.52 | 65.36 |
CDY65011 | Canola | cytosol | 64.52 | 65.36 |
VIT_03s0038g02440.t01 | Wine grape | cytosol | 65.16 | 65.16 |
CDY12089 | Canola | cytosol | 63.87 | 64.71 |
Solyc01g111600.2.1 | Tomato | nucleus | 63.87 | 64.71 |
PGSC0003DMT400015784 | Potato | cytosol | 63.87 | 64.71 |
CDX88005 | Canola | cytosol | 60.0 | 64.14 |
CDY07874 | Canola | cytosol | 60.0 | 64.14 |
KRH29001 | Soybean | cytosol | 64.52 | 64.1 |
CDX72748 | Canola | cytosol | 63.23 | 64.05 |
VIT_04s0023g03910.t01 | Wine grape | cytosol | 49.03 | 62.81 |
AT5G66110.1 | Thale cress | cytosol | 59.35 | 62.59 |
CDY52653 | Canola | cytosol | 60.0 | 60.78 |
Bra011581.1-P | Field mustard | cytosol | 60.0 | 60.78 |
AT4G35060.1 | Thale cress | cytosol | 59.35 | 60.13 |
CDX69108 | Canola | cytosol | 59.35 | 60.13 |
PGSC0003DMT400009390 | Potato | cytosol | 60.0 | 58.49 |
CDY17504 | Canola | cytosol | 58.06 | 58.44 |
CDX76309 | Canola | cytosol | 58.06 | 58.44 |
Bra034669.1-P | Field mustard | cytosol | 58.06 | 58.44 |
Solyc02g083550.1.1 | Tomato | cytosol | 58.06 | 56.6 |
VIT_04s0023g03890.t01 | Wine grape | cytosol | 58.06 | 56.25 |
TraesCS5A01G191400.1 | Wheat | cytosol | 56.77 | 55.0 |
KRH24318 | Soybean | cytosol, nucleus, plastid | 29.68 | 53.49 |
TraesCS4A01G211400.1 | Wheat | mitochondrion, plastid | 49.68 | 52.03 |
TraesCS3A01G206100.1 | Wheat | cytosol | 48.39 | 49.67 |
TraesCS2A01G287200.1 | Wheat | cytosol | 47.74 | 49.01 |
TraesCS5A01G244000.1 | Wheat | cytosol | 47.74 | 48.68 |
TraesCS2A01G160700.1 | Wheat | cytosol | 49.68 | 47.53 |
HORVU2Hr1G011060.1 | Barley | nucleus, plastid | 46.45 | 46.45 |
KRH28829 | Soybean | cytosol | 34.84 | 44.63 |
TraesCS6A01G259700.1 | Wheat | mitochondrion | 29.68 | 32.17 |
TraesCS7A01G345500.1 | Wheat | cytosol | 30.97 | 29.27 |
TraesCS5A01G516900.1 | Wheat | plastid | 32.9 | 26.15 |
TraesCS1A01G200700.1 | Wheat | cytosol, plastid | 29.03 | 23.08 |
Protein Annotations
EnsemblPlants:TraesCS2A01G064900.1 | EnsemblPlantsGene:TraesCS2A01G064900 | Gene3D:3.30.70.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 |
GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 |
PANTHER:PTHR22814 | PANTHER:PTHR22814:SF168 | PFAM:PF00403 | PFscan:PS50846 | SUPFAM:SSF55008 | TIGR:cd00371 |
MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:29261927..29262565
Molecular Weight (calculated)
17292.8 Da
IEP (calculated)
9.914
GRAVY (calculated)
-0.549
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIVDVVSEY CSLPRGRRHM KKRKQFQTVE MKVRIDCEGC ERKVKKALDD MKGVSSVEVT PKQNKVTVTG YVDPAKVMRR VAYKTGKRVE PWPYVPYDVV
101: AHPYAPGAYD KRAPAGYVRN VMSDPSAAPL ARASSTEARY TAAFSDENPN ACSVM
101: AHPYAPGAYD KRAPAGYVRN VMSDPSAAPL ARASSTEARY TAAFSDENPN ACSVM
001: MGVLDHVSEM FDCSHGHKIK KRKQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVTLEP KAHKVTVVGY VDPNKVVARM SHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM
Arabidopsis Description
HIPP26HIPP26 [Source:UniProtKB/TrEMBL;Acc:A0A178V1F5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.