Factsheet for TraesCS2D01G600500.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G064900.1
TraesCS2A01G287200.1
TraesCS2B01G077100.1
TraesCS2B01G304100.1
TraesCS2D01G063000.1
TraesCS2D01G285700.1
TraesCS3A01G206100.1
TraesCS3B01G238100.1
TraesCS3D01G209500.1
TraesCS5A01G244000.1
TraesCS5B01G242000.1
TraesCS5D01G250700.1
TraesCS6A01G043000.1
TraesCS6B01G059000.1
TraesCS6D01G049600.1
TraesCS7A01G382700.1
TraesCS7B01G285400.1
TraesCS7D01G379100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	TraesCS2A01G064900.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS2A01G287200.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS2B01G077100.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS2B01G304100.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS2D01G063000.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS2D01G285700.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS3A01G206100.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS3B01G238100.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS3D01G209500.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS5A01G244000.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS5B01G242000.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS5D01G250700.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS6A01G043000.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS6B01G059000.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS6D01G049600.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS7A01G382700.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS7B01G285400.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS7D01G379100.1	AT4G38580.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	96.58	96.58
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	90.68	91.25
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.63	81.36
Zm00001d001798_P002	Maize	plastid	77.33	75.91
EES13117	Sorghum	endoplasmic reticulum	77.33	74.55
Zm00001d026639_P002	Maize	plasma membrane	75.78	74.39
KXG37573	Sorghum	cytosol	27.64	63.12
GSMUA_Achr4P05400_001	Banana	cytosol	47.83	55.8
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	57.76	55.03
AT5G53470.1	Thale cress	endoplasmic reticulum	56.21	53.55
CDY62840	Canola	endoplasmic reticulum	56.21	53.39
CDY19024	Canola	endoplasmic reticulum	55.28	52.51
Bra022656.1-P	Field mustard	endoplasmic reticulum	55.59	52.49
CDY49168	Canola	endoplasmic reticulum	55.59	52.34
KRH64393	Soybean	endoplasmic reticulum	56.21	52.31
Solyc03g082910.2.1	Tomato	nucleus	55.59	51.73
PGSC0003DMT400047661	Potato	endoplasmic reticulum	55.59	51.44
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	55.59	51.0
KRH53542	Soybean	endoplasmic reticulum	55.9	50.85
CDX89227	Canola	endoplasmic reticulum	55.28	50.57
AT4G27780.1	Thale cress	endoplasmic reticulum	55.59	50.56
CDX92839	Canola	endoplasmic reticulum	25.16	48.5
Bra026307.1-P	Field mustard	endoplasmic reticulum	54.04	47.8
Bra019027.1-P	Field mustard	endoplasmic reticulum	36.65	46.83
CDY29860	Canola	endoplasmic reticulum	36.65	46.83
TraesCS4D01G227800.1	Wheat	endoplasmic reticulum	16.15	9.81

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.20	MapMan:35.1	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:FERM/acyl-CoA-bd_prot_sf	GO:GO:0000062	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000582	InterPro:IPR002110	InterPro:IPR014352	InterPro:IPR020683	InterPro:IPR036770
PFAM:PF00887	PFAM:PF12796	PRINTS:PR00689	PFscan:PS50088	PFscan:PS50297	PFscan:PS51228
PANTHER:PTHR24119	PANTHER:PTHR24119:SF0	SMART:SM00248	SUPFAM:SSF47027	SUPFAM:SSF48403	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS2D01G600500	EnsemblPlants:TraesCS2D01G600500.1	TIGR:cd00204	SEG:seg	:	:

Description

No Description!

Coordinates

chr2D:+:651275584..651278776

Molecular Weight (calculated)

34413.7 Da

IEP (calculated)

4.091

GRAVY (calculated)

-0.377

Length

322 amino acids

Sequence
(BLAST)

001: MGGDWQELAQ SAVIGLIFAF LVAKLISVVL AFKEDNLRIT RSAPDPAPSP DAADPALDGG GGDGDGDSDS DGDWEGVEST ELDEDFSAAS AFVAASAAGV
101: PEEAQLRLYG LYKIATEGPC TAPQPSALKL KARAKWNAWN KLGAMPTEEA MEEYITIVDE IFPNWSDGSK KKDGETTMSA SGSKGPMGPV FSSLMYEEDQ
201: GNESELGDIH VSAREGAIDD VKKHLAAGVQ INIRDSEERT PLHWAVDRGH LDAVEVLVNS NADVNAQDNE GQTALHYAVL CEREDIAELL VKHHADLQIK
301: DGDGNTAQDL CSSAWPFMKP AN

Best Arabidopsis Sequence Match ( AT4G27780.1 )
(BLAST)

001: MGDWAQLAQS VILGLIFSYL LAKLISIVVT FKEDNLSLTR HPEESQLEIK PEGVDSRRLD SSCGGFGGEA DSLVAEQGSS RSDSVAGDDS EEDDDWEGVE
101: STELDEAFSA ATLFVTTAAA DRLSQKVPSD VQQQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIEIVTQLYP TWLDGGVKAG
201: SRGGDDAASN SRGTMGPVFS SLVYDEESEN ELKIDAIHGF AREGEVENLL KSIESGIPVN ARDSEGRTPL HWAIDRGHLN IAKVLVDKNA DVNAKDNEGQ
301: TPLHYAVVCD REAIAEFLVK QNANTAAKDE DGNSPLDLCE SDWPWIRDSA KQAD

Arabidopsis Description

ACBP2AtACBP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V3N7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.