Factsheet for Solyc03g082910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
peroxisome 1
extracellular 4
endoplasmic reticulum 6
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	peroxisome
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	vacuole

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g065980.2.1
Solyc01g111600.2.1
Solyc06g063280.1.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	Solyc01g065980.2.1	AT3G16770.1	15159625
AT4G27780.1	Solyc06g063280.1.1	AT3G21150.1	21798944
AT4G27780.1	Solyc01g111600.2.1	AT4G38580.1	18823312
AT5G53470.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT5G53470.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047661	Potato	endoplasmic reticulum	94.51	93.97
AT5G53470.1	Thale cress	endoplasmic reticulum	60.69	62.13
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	63.01	62.11
KRH64393	Soybean	endoplasmic reticulum	61.56	61.56
CDY19024	Canola	endoplasmic reticulum	58.96	60.18
CDY62840	Canola	endoplasmic reticulum	58.96	60.18
KRH53542	Soybean	endoplasmic reticulum	60.69	59.32
Bra022656.1-P	Field mustard	endoplasmic reticulum	58.38	59.24
CDX89227	Canola	endoplasmic reticulum	59.54	58.52
CDY49168	Canola	endoplasmic reticulum	57.51	58.19
AT4G27780.1	Thale cress	endoplasmic reticulum	58.38	57.06
GSMUA_Achr4P05400_001	Banana	cytosol	45.38	56.88
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	52.6	56.52
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	54.91	56.21
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	51.45	55.62
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	51.73	55.59
Zm00001d026639_P002	Maize	plasma membrane	52.6	55.49
Zm00001d001798_P002	Maize	plastid	51.73	54.57
EES13117	Sorghum	endoplasmic reticulum	52.6	54.49
Bra026307.1-P	Field mustard	endoplasmic reticulum	57.23	54.4
CDY29860	Canola	endoplasmic reticulum	37.86	51.98
Bra019027.1-P	Field mustard	endoplasmic reticulum	37.86	51.98
KXG37573	Sorghum	cytosol	20.23	49.65
CDX92839	Canola	endoplasmic reticulum	23.7	49.1
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.08	47.03
Solyc04g078090.2.1	Tomato	endoplasmic reticulum, golgi	19.94	15.47

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.20	Gene3D:1.25.40.960	MapMan:35.1	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:FERM/acyl-CoA-bd_prot_sf	GO:GO:0000062	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000582	InterPro:IPR002110	InterPro:IPR014352	InterPro:IPR020683	InterPro:IPR036770	UniProt:K4BI67
PFAM:PF00887	PFAM:PF12796	PIRSF:PIRSF000654	PRINTS:PR00689	PRINTS:PR01415	ScanProsite:PS00414
PFscan:PS50088	PFscan:PS50297	PFscan:PS51228	PANTHER:PTHR24119	PANTHER:PTHR24119:SF0	InterPro:Profilin_CS
SMART:SM00248	SUPFAM:SSF47027	SUPFAM:SSF48403	EnsemblPlantsGene:Solyc03g082910.2	EnsemblPlants:Solyc03g082910.2.1	TMHMM:TMhelix
UniParc:UPI0002768764	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:52789864..52794406

Molecular Weight (calculated)

38215.3 Da

IEP (calculated)

4.300

GRAVY (calculated)

-0.464

Length

346 amino acids

Sequence
(BLAST)

001: MADWQQYLQS IIFGLIFSFL LAKLFSIIFA FRDENLRITR ADSSEAEEKT SPEEAGVSED TEPLIQRNDG GLKGSSVSGG EDSDDDWEGV ESTELDEAFS
101: AATAFVVATA ADRSHKVSNE VQLQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YLDIVTELFP SWLDGSANKK KGEESSGAHN
201: ADTRGRPMGP VFSTFISEED SENELKLDEI HAFAREGDDE NLLKCIESGV PVDVKDSEGR APLHWAVDRG HLNITKLLLS RNADVNAKDL EGQTALHYAA
301: VCERADIAEF LVKHGADVEI KDNEGDCPRD VCELHWPWLQ QATVHN

Best Arabidopsis Sequence Match ( AT5G53470.1 )
(BLAST)

001: MADWYQLAQS IIFGLIFAYL LAKLISILLA FKDENLSLTR NHTTQSEYEN LRKVETLTGI SGETDSLIAE QGSLRGDEDE SDDDDWEGVE STELDEAFSA
101: ATAFVAAAAS DRLSQKVSNE LQLQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIDLVTQLYP AWVEGGSKRR NRSGEAAGPM
201: GPVFSSLVYE EESDNELKID AIHAFAREGE VENLLKCIEN GIPVNARDSE GRTPLHWAID RGHLNVAEAL VDKNADVNAK DNEGQTSLHY AVVCEREALA
301: EFLVKQKADT TIKDEDGNSP LDLCESEWSW MREKKDSN

Arabidopsis Description

ACBP1Acyl-CoA-binding domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SM23]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.