Factsheet for Bra022656.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 6
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53470.1	Bra002403.1-P	AT5G22290.1	21798944
AT5G53470.1	Bra006619.1-P	AT5G22290.1	21798944
AT5G53470.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49168	Canola	endoplasmic reticulum	97.95	97.66
AT5G53470.1	Thale cress	endoplasmic reticulum	85.34	86.09
Bra026307.1-P	Field mustard	endoplasmic reticulum	71.85	67.31
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	61.29	59.54
KRH64393	Soybean	endoplasmic reticulum	59.82	58.96
Bra019027.1-P	Field mustard	endoplasmic reticulum	43.4	58.73
GSMUA_Achr4P05400_001	Banana	cytosol	47.51	58.7
Solyc03g082910.2.1	Tomato	nucleus	59.24	58.38
PGSC0003DMT400047661	Potato	endoplasmic reticulum	59.53	58.33
KRH53542	Soybean	endoplasmic reticulum	59.82	57.63
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	55.13	55.62
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	52.49	55.59
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	52.2	55.28
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	51.61	55.0
EES13117	Sorghum	endoplasmic reticulum	53.67	54.79
Zm00001d026639_P002	Maize	plasma membrane	52.49	54.57
Zm00001d001798_P002	Maize	plastid	52.49	54.57
KXG37573	Sorghum	cytosol	19.94	48.23
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.38	45.34
Bra019240.1-P	Field mustard	endoplasmic reticulum, golgi	17.01	16.02
Bra013778.1-P	Field mustard	endoplasmic reticulum, vacuole	17.01	15.43

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.20	MapMan:35.1	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:Bra022656	EnsemblPlants:Bra022656.1	EnsemblPlants:Bra022656.1-P	InterPro:FERM/acyl-CoA-bd_prot_sf
GO:GO:0000003	GO:GO:0000062	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886
GO:GO:0006629	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009409	GO:GO:0009505	GO:GO:0009628	GO:GO:0009719	GO:GO:0009737	GO:GO:0009791
GO:GO:0010029	GO:GO:0010162	GO:GO:0010288	GO:GO:0016020	GO:GO:0016021	GO:GO:0030312
GO:GO:0032791	GO:GO:0048316	GO:GO:0070300	GO:GO:1900140	InterPro:IPR000582	InterPro:IPR002110
InterPro:IPR014352	InterPro:IPR020683	InterPro:IPR036770	UniProt:M4E1K6	PFAM:PF00887	PFAM:PF13637
PIRSF:PIRSF000654	PRINTS:PR00689	PRINTS:PR01415	PFscan:PS50088	PFscan:PS50297	PFscan:PS51228
PANTHER:PTHR24119	PANTHER:PTHR24119:SF0	SMART:SM00248	SUPFAM:SSF47027	SUPFAM:SSF48403	TMHMM:TMhelix
UniParc:UPI0002546C01	SEG:seg	:	:	:	:

Description

AT5G53470 (E=3e-150) ACBP1, ACBP | ACBP1 (ACYL-COA BINDING PROTEIN 1); acyl-CoA binding / lead ion binding

Coordinates

chrA02:-:8224203..8226054

Molecular Weight (calculated)

37457.4 Da

IEP (calculated)

4.277

GRAVY (calculated)

-0.444

Length

341 amino acids

Sequence
(BLAST)

001: MGVDWFQLAQ SLIFGLIFAY LLAKLISILV AFKDDNLSLT RSHDAAQSEN EYYRKVDSSA GETDSLVAEQ GSLRGDEDDD EDDWEGVEST ELDEAFSAAT
101: AFVAAAASDR LSQKVSSELQ LQLYGLYKIA TEGGCTAPQP SALKMTARAK WQAWQKMGAM PAEEAMEKYI DLVTHLYPAW VEGGSKGRNR SGDAAGSSSR
201: APMGPVFSSL VYEEESENEL KIDAVHAFAR EGEVENLLKC IESGIPVNAR DSEGRTPLHW AIDRGHLNVA KALVDNKADV NAKDNEGQTA LHYAVVCERE
301: ALAEFLVKQK ADTSIKDEDG NSPLDLCESE WSWMREKKDS D

Best Arabidopsis Sequence Match ( AT5G53470.1 )
(BLAST)

001: MADWYQLAQS IIFGLIFAYL LAKLISILLA FKDENLSLTR NHTTQSEYEN LRKVETLTGI SGETDSLIAE QGSLRGDEDE SDDDDWEGVE STELDEAFSA
101: ATAFVAAAAS DRLSQKVSNE LQLQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIDLVTQLYP AWVEGGSKRR NRSGEAAGPM
201: GPVFSSLVYE EESDNELKID AIHAFAREGE VENLLKCIEN GIPVNARDSE GRTPLHWAID RGHLNVAEAL VDKNADVNAK DNEGQTSLHY AVVCEREALA
301: EFLVKQKADT TIKDEDGNSP LDLCESEWSW MREKKDSN

Arabidopsis Description

ACBP1Acyl-CoA-binding domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SM23]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.