CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
peroxisome 1
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	peroxisome
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92834
EES11880
EES14354

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	EER92834	AT4G38580.1	18823312
AT4G27780.1	EES11880	AT4G38580.1	18823312
AT4G27780.1	EES14354	AT4G38580.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026639_P002	Maize	plasma membrane	88.62	90.24
KXG37573	Sorghum	cytosol	34.43	81.56
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	74.55	77.33
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	73.95	76.71
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	73.35	76.56
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.41	65.68
GSMUA_Achr4P05400_001	Banana	cytosol	46.11	55.8
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	55.99	55.33
CDY62840	Canola	endoplasmic reticulum	55.99	55.16
AT5G53470.1	Thale cress	endoplasmic reticulum	55.69	55.03
Bra022656.1-P	Field mustard	endoplasmic reticulum	54.79	53.67
CDY49168	Canola	endoplasmic reticulum	54.49	53.22
Solyc03g082910.2.1	Tomato	nucleus	54.49	52.6
PGSC0003DMT400047661	Potato	endoplasmic reticulum	54.79	52.59
CDY19024	Canola	endoplasmic reticulum	52.69	51.92
KRH64393	Soybean	endoplasmic reticulum	52.69	50.87
AT4G27780.1	Thale cress	endoplasmic reticulum	53.59	50.56
KRH53542	Soybean	endoplasmic reticulum	53.59	50.56
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	52.99	50.43
CDX89227	Canola	endoplasmic reticulum	52.69	50.0
CDX92839	Canola	endoplasmic reticulum	24.25	48.5
Bra026307.1-P	Field mustard	endoplasmic reticulum	52.1	47.8
CDY29860	Canola	endoplasmic reticulum	34.13	45.24
Bra019027.1-P	Field mustard	endoplasmic reticulum	33.83	44.84
EER95185	Sorghum	endoplasmic reticulum	16.47	9.89

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.20	Gene3D:1.25.40.960	MapMan:35.1	EntrezGene:8076481	InterPro:Acyl-CoA-binding_protein
InterPro:Acyl-CoA-binding_sf	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	UniProt:C5YAM1	EnsemblPlants:EES13117
ProteinID:EES13117	ProteinID:EES13117.1	InterPro:FERM/acyl-CoA-bd_prot_sf	GO:GO:0000062	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000582	InterPro:IPR002110
InterPro:IPR014352	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00887	PFAM:PF12796	PRINTS:PR00689
PRINTS:PR01415	PFscan:PS50088	PFscan:PS50297	PFscan:PS51228	PANTHER:PTHR24119	PANTHER:PTHR24119:SF0
SMART:SM00248	EnsemblPlantsGene:SORBI_3006G270900	SUPFAM:SSF47027	SUPFAM:SSF48403	unigene:Sbi.8992	TMHMM:TMhelix
UniParc:UPI0001A87601	RefSeq:XP_002448789.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:60292576..60295346

Molecular Weight (calculated)

35672.2 Da

IEP (calculated)

4.274

GRAVY (calculated)

-0.354

Length

334 amino acids

Sequence
(BLAST)

001: MAGDWQELGQ AAAIGLLFAY LVAKLISTVI AFKEDNLRIT RSPPSSPTAA APAPATPFPA EPRLPSHDGS TDGGSASDSD WEGVESTELD EEFSAASAFV
101: AASAASGTSV PEEAQLRLYG LYKIATEGPC TAPQPSALKL KARAKWNAWH KLGAMPTEEA MQEYITIVQE LFPNWDAGAS AKRKDEDNMA SASASKGPMG
201: PVFSSLMYEE DEGNDSELGD IHVSAREGAT EDIVKFLAAG VEVNVRDTEG RTPLHWAVDR GHLSAVEVLA KANADLNAKD NEGQTALHYA AVCEREDIAE
301: LLVKHHADLQ IKDEDGNTAQ DLCPSSWSFM NQAN

Best Arabidopsis Sequence Match ( AT4G27780.1 )
(BLAST)

001: MGDWAQLAQS VILGLIFSYL LAKLISIVVT FKEDNLSLTR HPEESQLEIK PEGVDSRRLD SSCGGFGGEA DSLVAEQGSS RSDSVAGDDS EEDDDWEGVE
101: STELDEAFSA ATLFVTTAAA DRLSQKVPSD VQQQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIEIVTQLYP TWLDGGVKAG
201: SRGGDDAASN SRGTMGPVFS SLVYDEESEN ELKIDAIHGF AREGEVENLL KSIESGIPVN ARDSEGRTPL HWAIDRGHLN IAKVLVDKNA DVNAKDNEGQ
301: TPLHYAVVCD REAIAEFLVK QNANTAAKDE DGNSPLDLCE SDWPWIRDSA KQAD

Arabidopsis Description

ACBP2AtACBP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V3N7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.