Factsheet for GSMUA_Achr4P04370_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 2
peroxisome 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	peroxisome
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P02370_001
GSMUA_Achr1P10450_001
GSMUA_Achr4P25770_001
GSMUA_Achr6P03790_001
GSMUA_Achr7P08700_001
GSMUA_Achr9P13880_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	GSMUA_Achr1P10450_001	AT3G21150.1	21798944
AT4G27780.1	GSMUA_Achr6P03790_001	AT3G21150.1	21798944
AT4G27780.1	GSMUA_Achr7P08700_001	AT3G21150.1	21798944
AT4G27780.1	GSMUA_Achr9P13880_001	AT3G21150.1	21798944
AT4G27780.1	GSMUA_AchrUn_...	AT3G21150.1	21798944
AT4G27780.1	GSMUA_Achr1P02370_001	AT4G38580.1	18823312
AT4G27780.1	GSMUA_Achr4P25770_001	AT4G38580.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05400_001	Banana	cytosol	60.65	74.28
KRH64393	Soybean	endoplasmic reticulum	60.35	58.96
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	60.65	58.4
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	55.03	57.76
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	54.73	57.45
AT5G53470.1	Thale cress	endoplasmic reticulum	57.1	57.1
Zm00001d001798_P002	Maize	plastid	55.33	57.01
KRH53542	Soybean	endoplasmic reticulum	59.47	56.78
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	53.55	56.56
Zm00001d026639_P002	Maize	plasma membrane	54.44	56.1
CDY62840	Canola	endoplasmic reticulum	56.21	56.05
EES13117	Sorghum	endoplasmic reticulum	55.33	55.99
CDY19024	Canola	endoplasmic reticulum	55.33	55.16
Bra022656.1-P	Field mustard	endoplasmic reticulum	55.62	55.13
CDY49168	Canola	endoplasmic reticulum	55.62	54.97
Solyc03g082910.2.1	Tomato	nucleus	56.21	54.91
PGSC0003DMT400047661	Potato	endoplasmic reticulum	56.21	54.6
CDX89227	Canola	endoplasmic reticulum	55.62	53.41
AT4G27780.1	Thale cress	endoplasmic reticulum	55.62	53.11
Bra026307.1-P	Field mustard	endoplasmic reticulum	54.73	50.82
Bra019027.1-P	Field mustard	endoplasmic reticulum	37.87	50.79
CDY29860	Canola	endoplasmic reticulum	37.28	50.0
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	34.91	50.0
CDX92839	Canola	endoplasmic reticulum	23.96	48.5
KXG37573	Sorghum	cytosol	20.12	48.23
GSMUA_Achr4P19960_001	Banana	endoplasmic reticulum	20.12	16.5
GSMUA_AchrUn_...	Banana	golgi, nucleus, peroxisome	19.23	16.01

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.20	MapMan:35.1	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:FERM/acyl-CoA-bd_prot_sf	GO:GO:0000062	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr4G04370_001	EnsemblPlants:GSMUA_Achr4P04370_001
EnsemblPlants:GSMUA_Achr4T04370_001	InterPro:IPR000582	InterPro:IPR002110	InterPro:IPR014352	InterPro:IPR020683	InterPro:IPR036770
UniProt:M0SL04	PFAM:PF00887	PFAM:PF13857	PRINTS:PR00689	PFscan:PS50088	PFscan:PS50297
PFscan:PS51228	PANTHER:PTHR24119	PANTHER:PTHR24119:SF0	SMART:SM00248	SUPFAM:SSF47027	SUPFAM:SSF48403
TMHMM:TMhelix	UniParc:UPI000294F646	SEG:seg	:	:	:

Description

Acyl-CoA-binding domain-containing protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G04370_001]

Coordinates

chr4:-:3430721..3438377

Molecular Weight (calculated)

36934.2 Da

IEP (calculated)

4.293

GRAVY (calculated)

-0.318

Length

338 amino acids

Sequence
(BLAST)

001: MGDWQDLCQA VFIGLIFSFL IAKLISVVIS FKEDNLRVVR EHDLTAEAPL VERSSLDVGK KADEGVGGSE KEEEGLLEDD SDWEGIESTE LDEAFTAATA
101: FVAATAADKN STKVSSDVQL QLYGLYKIAT EGPCTIPQPS ALKMTARAKW NAWQKLGSMP QEEAMQKYLM IVSELYPSWA SGSSKKMNDE DTLPSSSAAK
201: GPMGPVFSTF VHEEESDTDI KLEPVHDFAR EGDADGLLAL IANGASVNSK DSEGRTPLHW AVDRGHLGVV EILLNKNADV NAQDDERQTP LHYAVLCEQE
301: AIAELLIKHH ANHHIKDEDG NSPLDLCGSQ WAFMVTSN

Best Arabidopsis Sequence Match ( AT4G27780.1 )
(BLAST)

001: MGDWAQLAQS VILGLIFSYL LAKLISIVVT FKEDNLSLTR HPEESQLEIK PEGVDSRRLD SSCGGFGGEA DSLVAEQGSS RSDSVAGDDS EEDDDWEGVE
101: STELDEAFSA ATLFVTTAAA DRLSQKVPSD VQQQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIEIVTQLYP TWLDGGVKAG
201: SRGGDDAASN SRGTMGPVFS SLVYDEESEN ELKIDAIHGF AREGEVENLL KSIESGIPVN ARDSEGRTPL HWAIDRGHLN IAKVLVDKNA DVNAKDNEGQ
301: TPLHYAVVCD REAIAEFLVK QNANTAAKDE DGNSPLDLCE SDWPWIRDSA KQAD

Arabidopsis Description

ACBP2AtACBP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V3N7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.