Factsheet for GSMUA_Achr4P19960_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 6
plasma membrane 5
golgi 5
peroxisome 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	peroxisome
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, mitochondrion, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g09340.t01	Wine grape	endoplasmic reticulum, vacuole	21.36	28.11
GSMUA_AchrUn_...	Banana	golgi, nucleus, peroxisome	26.7	27.09
KRH77091	Soybean	endoplasmic reticulum, vacuole	19.17	26.87
GSMUA_Achr4P05400_001	Banana	cytosol	16.75	25.0
KRH28391	Soybean	endoplasmic reticulum	17.72	24.75
CDX92624	Canola	endoplasmic reticulum, vacuole	19.9	22.71
CDY03471	Canola	vacuole	20.15	22.37
Bra019240.1-P	Field mustard	endoplasmic reticulum, golgi	19.42	22.1
CDY10995	Canola	endoplasmic reticulum, golgi	19.42	22.1
AT4G24230.6	Thale cress	endoplasmic reticulum	19.42	21.86
Solyc04g078090.2.1	Tomato	endoplasmic reticulum, golgi	23.06	21.3
Bra013778.1-P	Field mustard	endoplasmic reticulum, vacuole	19.17	21.01
CDY34268	Canola	endoplasmic reticulum, vacuole	19.17	20.73
VIT_07s0129g00430.t01	Wine grape	endoplasmic reticulum, vacuole	22.57	20.67
PGSC0003DMT400055408	Potato	vacuole	22.09	20.54
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	16.5	20.12
Zm00001d028397_P001	Maize	endoplasmic reticulum, plasma membrane	24.27	18.38
TraesCS4B01G227100.1	Wheat	endoplasmic reticulum, plasma membrane	22.09	17.11
TraesCS4A01G071200.1	Wheat	endoplasmic reticulum	21.6	16.82
HORVU4Hr1G063810.1	Barley	endoplasmic reticulum	21.6	16.7
TraesCS4D01G227800.1	Wheat	endoplasmic reticulum	21.36	16.6
EER95185	Sorghum	endoplasmic reticulum	22.09	16.37
Os03t0243600-01	Rice	endoplasmic reticulum	22.57	16.34
Zm00001d015957_P001	Maize	plastid	11.89	15.96

Protein Annotations

EnsemblPlants:GSMUA_Achr4P19960_001	EnsemblPlants:GSMUA_Achr4T19960_001	EnsemblPlantsGene:GSMUA_Achr4G19960_001	Gene3D:1.20.80.10	GO:GO:0000062	GO:GO:0003674
GO:GO:0005488	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf	InterPro:FERM/acyl-CoA-bd_prot_sf	InterPro:IPR000582	InterPro:IPR014352
PANTHER:PTHR23310	PANTHER:PTHR23310:SF96	PFAM:PF00887	PFscan:PS51228	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF47027	TMHMM:TMhelix	UniParc:UPI0002960C2E	UniProt:M0SQF9	MapMan:35.1	:

Description

Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G19960_001]

Coordinates

chr4:+:20754643..20757868

Molecular Weight (calculated)

45907.0 Da

IEP (calculated)

4.448

GRAVY (calculated)

-0.425

Length

412 amino acids

Sequence
(BLAST)

001: MEFFVELLVT ALISVLLAFI ISKIAAAAAA DDADLPEDKS EVVPLAVDVG PRLQEASYVG RGFDLDPIEE ETEEWEERSG VALAENNRLE LVVADAEEQR
101: LGQEVSGFVL EKEIIEEEST KKKEDDEAEI RMIVDGLVKQ EERFDKDEAN VGGAVEKVVE LGGEYAAEVE DVKVLNEEKG TSFLDGEDDW EGIERSELEK
201: LFGEATEFVH IKKGGDAVLK LNNEAQMQLY GLQKIATEGP CNAQQPMALR VSARSKWHAW QRLGNMNPEV AMEQYVCLLT ENIPGWMAER HNEETKGCDG
301: NSPLAAEASG TGLHDSKAYV HHKSETERLF FHSRCHSQCR YWPLTFQTRY IHLNESNVVK TVVNGKRFLL SLSKRSTTQL LLDTLISTSL CLGHGGASSC
401: SSKMQGARRE ER

Best Arabidopsis Sequence Match ( AT4G24230.6 )
(BLAST)

001: MEVFLEMLLT AVVALLFSFL LAKLVSVATV ENDLSSDQPL KPEIGVGVTE DVRFGMKMDA RVLESQRNFQ VVDENVELVD RFLSEEADRV YEVDEAVTGN
101: AKICGDREAE SSAAASSENY VIAEEVILVR GQDEQSDSAE AESISSVSPE NVVAEEIKSQ GQEEVTELGR SGCVENEESG GDVLVAESEE VRVEKSSNMV
201: EESDAEAENE EKTELTIEED DDWEGIERSE LEKAFAAAVN LLEESGKAEE IGAEAKMELF GLHKIATEGS CREAQPMAVM ISARAKWNAW QKLGNMSQEE
301: AMEQYLALVS KEIPGLTKAG HTVGKMSEME TSVGLPPNSG SLEDPTNLVT TGVDESSKNE IVSGER

Arabidopsis Description

ACBP3Acyl-CoA-binding domain 3 [Source:UniProtKB/TrEMBL;Acc:B3H4G6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.