Factsheet for Solyc04g078090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 2
peroxisome 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	peroxisome
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055408	Potato	vacuole	72.42	72.91
VIT_18s0001g09340.t01	Wine grape	endoplasmic reticulum, vacuole	20.18	28.75
KRH05608	Soybean	endoplasmic reticulum, vacuole	23.32	25.49
CDY10995	Canola	endoplasmic reticulum, golgi	20.4	25.14
AT4G24230.6	Thale cress	endoplasmic reticulum	20.63	25.14
KRH15433	Soybean	endoplasmic reticulum, vacuole	22.2	24.94
Bra019240.1-P	Field mustard	endoplasmic reticulum, golgi	20.18	24.86
CDY34268	Canola	endoplasmic reticulum, vacuole	21.08	24.67
Bra013778.1-P	Field mustard	endoplasmic reticulum, vacuole	20.4	24.2
CDX92624	Canola	endoplasmic reticulum, vacuole	19.51	24.1
GSMUA_Achr4P19960_001	Banana	endoplasmic reticulum	21.3	23.06
CDY03471	Canola	vacuole	19.06	22.91
GSMUA_AchrUn_...	Banana	golgi, nucleus, peroxisome	19.06	20.94
VIT_07s0129g00430.t01	Wine grape	endoplasmic reticulum, vacuole	20.4	20.22
Solyc03g082910.2.1	Tomato	nucleus	15.47	19.94
TraesCS4D01G227800.1	Wheat	endoplasmic reticulum	19.28	16.23
Zm00001d028397_P001	Maize	endoplasmic reticulum, plasma membrane	19.28	15.81
HORVU4Hr1G063810.1	Barley	endoplasmic reticulum	18.61	15.57
TraesCS4B01G227100.1	Wheat	endoplasmic reticulum, plasma membrane	18.39	15.41
EER95185	Sorghum	endoplasmic reticulum	18.83	15.11
Os03t0243600-01	Rice	endoplasmic reticulum	18.83	14.76
Zm00001d015957_P001	Maize	plastid	10.09	14.66
TraesCS4A01G071200.1	Wheat	endoplasmic reticulum	16.82	14.18

Protein Annotations

EnsemblPlants:Solyc04g078090.2.1	EnsemblPlantsGene:Solyc04g078090.2	Gene3D:1.20.80.10	GO:GO:0000062	GO:GO:0003674	GO:GO:0005488
InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf	InterPro:FERM/acyl-CoA-bd_prot_sf	InterPro:IPR000582	InterPro:IPR014352	PANTHER:PTHR23310
PANTHER:PTHR23310:SF96	PFAM:PF00887	PFscan:PS51228	SEG:seg	SignalP:SignalP-TM	SUPFAM:SSF47027
TMHMM:TMhelix	UniParc:UPI0002766862	UniProt:K4BUP6	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr4:+:62936313..62940970

Molecular Weight (calculated)

49808.3 Da

IEP (calculated)

4.216

GRAVY (calculated)

-0.712

Length

446 amino acids

Sequence
(BLAST)

001: MNLFQEFFVT AMLALVFSCI IVKIVSAAVS KDERVDTEKI VVEEVKISKG LVVRSRKSKK RVKFVEEGVV GNVDRVEREI PKKDGVEGFI EKKIEGVLRK
101: GEDFNGEKGF ENLDLVEHCG GEREVEIEGV LKKGDDFKGE KVCESLELIE QCGGEREVSD DPEVCGKNGL VEEKDEVKKI EGVLEKDDDF TVEKEDDDFT
201: VEKVCENLDL NKHCGGESDD HDDADVCSKI ELMEEKDEVK KIDELLVVKE KDTANAVVVD EVKVGENEVV EVGGGLSKGD DEKTDKMAMD EDIDDDWEGI
301: ERSELEEEFA KAVNFVDGGN GKNSGMENMG SELMMQLYGL QKIAIEGPCY EPQPMALKVY ARAKWNAWQK MGSMNQEVAM EQYIKLLSDH VPNWTHHSKN
401: DCEVGSSETK MPGDPDPIPD SSNDTGKDER TQETNRAAEG DKGEKE

Best Arabidopsis Sequence Match ( AT4G24230.1 )
(BLAST)

001: MEVFLEMLLT AVVALLFSFL LAKLVSVATV ENDLSSDQPL KPEIGVGVTE DVRFGMKMDA RVLESQRNFQ VVDENVELVD RFLSEEADRV YEVDEAVTGN
101: AKICGDREAE SSAAASSENY VIAEEVILVR GQDEQSDSAE AESISSVSPE NVVAEEIKSQ GQEEVTELGR SGCVENEESG GDVLVAESEE VRVEKSSNMV
201: EESDAEAENE EKTELTIEED DDWEGIERSE LEKAFAAAVN LLEESGKAEE IGAEAKMELF GLHKIATEGS CREAQPMAVM ISARAKWNAW QKLGNMSQEE
301: AMEQYLALVS KEIPGLTKAG HTVGKMSEME TSVGLPPNSG SLEDPTNLVT TGVDESSKNV SGER

Arabidopsis Description

ACBP3Acyl-CoA-binding domain 3 [Source:UniProtKB/TrEMBL;Acc:B3H4G6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.