Factsheet for PGSC0003DMT400055408

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 2
peroxisome 1
extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	peroxisome
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078090.2.1	Tomato	endoplasmic reticulum, golgi	72.91	72.42
VIT_18s0001g09340.t01	Wine grape	endoplasmic reticulum, vacuole	20.99	29.71
AT4G24230.6	Thale cress	endoplasmic reticulum	21.44	25.96
KRH15433	Soybean	endoplasmic reticulum, vacuole	22.57	25.19
KRH05608	Soybean	endoplasmic reticulum, vacuole	23.02	25.0
Bra019240.1-P	Field mustard	endoplasmic reticulum, golgi	19.64	24.03
CDY10995	Canola	endoplasmic reticulum, golgi	19.64	24.03
CDY03471	Canola	vacuole	19.86	23.72
CDY34268	Canola	endoplasmic reticulum, vacuole	20.32	23.62
CDX92624	Canola	endoplasmic reticulum, vacuole	19.19	23.55
Bra013778.1-P	Field mustard	endoplasmic reticulum, vacuole	19.86	23.4
GSMUA_Achr4P19960_001	Banana	endoplasmic reticulum	20.54	22.09
PGSC0003DMT400047661	Potato	endoplasmic reticulum	16.03	20.4
GSMUA_AchrUn_...	Banana	golgi, nucleus, peroxisome	18.51	20.2
VIT_07s0129g00430.t01	Wine grape	endoplasmic reticulum, vacuole	20.32	20.0
EER95185	Sorghum	endoplasmic reticulum	19.64	15.65
Zm00001d015957_P001	Maize	plastid	10.84	15.64
Zm00001d028397_P001	Maize	endoplasmic reticulum, plasma membrane	18.51	15.07
TraesCS4D01G227800.1	Wheat	endoplasmic reticulum	17.16	14.34
TraesCS4B01G227100.1	Wheat	endoplasmic reticulum, plasma membrane	16.48	13.72
HORVU4Hr1G063810.1	Barley	endoplasmic reticulum	16.48	13.7
Os03t0243600-01	Rice	endoplasmic reticulum	17.38	13.53
TraesCS4A01G071200.1	Wheat	endoplasmic reticulum	15.58	13.04

Protein Annotations

Gene3D:1.20.80.10	EntrezGene:102603913	MapMan:35.1	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf	InterPro:FERM/acyl-CoA-bd_prot_sf
GO:GO:0000062	GO:GO:0003674	GO:GO:0005488	InterPro:IPR000582	InterPro:IPR014352	UniProt:M1BXV1
PFAM:PF00887	EnsemblPlantsGene:PGSC0003DMG400021512	PGSC:PGSC0003DMG400021512	EnsemblPlants:PGSC0003DMT400055408	PFscan:PS51228	PANTHER:PTHR23310
PANTHER:PTHR23310:SF96	SUPFAM:SSF47027	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000296DAAF	RefSeq:XP_006362065.1
SEG:seg	:	:	:	:	:

Description

Acyl-CoA-binding protein, acbp [Source:PGSC_GENE;Acc:PGSC0003DMG400021512]

Coordinates

chr4:+:67280289..67285570

Molecular Weight (calculated)

49371.0 Da

IEP (calculated)

4.342

GRAVY (calculated)

-0.705

Length

443 amino acids

Sequence
(BLAST)

001: MNLFQEFFVT AMVTLIFSCI IVKFVSAAVS KDGRVDKEKI VVEEVKITKG LVVRRRKSKK RVKFVEEGVV GNVDRVEREI PNKDGVEGFV EKNIEGVLRK
101: GEDFKGEKGF GNLDLVEHCG GEREVEIEGV LKKGDDFKGE KVCESLELIE QCGGEREVSD GHDDADVCGK TGLVEEKDEV KKIEGVLKKG EDFTGEKVYE
201: NLDLTEHCGG EREMTDGHDD ADMCGKIGLM EEKDEVKKID ELLVVKEKDT ANAVVVDEVK VGENEVVEVG GGLSKGDDEK TDKMVMDEDS DDDWEGIERS
301: ELEEEFVKAV NFVDGGNGKN SSMENLGSEL MMQLYGLQKI AMEGPCHEPQ PMALKVYARA KWNAWQKMGS MNQEVAMEQY IKLLSDHVPE WTHHSKDDCE
401: VGSSETKMHG DPDPISDSSN DTGKDERTHE MNRAAEGDEG EKE

Best Arabidopsis Sequence Match ( AT4G24230.1 )
(BLAST)

001: MEVFLEMLLT AVVALLFSFL LAKLVSVATV ENDLSSDQPL KPEIGVGVTE DVRFGMKMDA RVLESQRNFQ VVDENVELVD RFLSEEADRV YEVDEAVTGN
101: AKICGDREAE SSAAASSENY VIAEEVILVR GQDEQSDSAE AESISSVSPE NVVAEEIKSQ GQEEVTELGR SGCVENEESG GDVLVAESEE VRVEKSSNMV
201: EESDAEAENE EKTELTIEED DDWEGIERSE LEKAFAAAVN LLEESGKAEE IGAEAKMELF GLHKIATEGS CREAQPMAVM ISARAKWNAW QKLGNMSQEE
301: AMEQYLALVS KEIPGLTKAG HTVGKMSEME TSVGLPPNSG SLEDPTNLVT TGVDESSKNV SGER

Arabidopsis Description

ACBP3Acyl-CoA-binding domain 3 [Source:UniProtKB/TrEMBL;Acc:B3H4G6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.