Factsheet for PGSC0003DMT400047661

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
peroxisome 1
extracellular 4
endoplasmic reticulum 6
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	peroxisome
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400015784
PGSC0003DMT400043311
PGSC0003DMT400050482
PGSC0003DMT400068177

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	PGSC0003DMT400043311	AT3G16770.1	15159625
AT4G27780.1	PGSC0003DMT400068177	AT3G21150.1	21798944
AT4G27780.1	PGSC0003DMT400015784	AT4G38580.1	18823312
AT5G53470.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT5G53470.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g082910.2.1	Tomato	nucleus	93.97	94.51
AT5G53470.1	Thale cress	endoplasmic reticulum	60.63	62.43
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	62.36	61.82
KRH64393	Soybean	endoplasmic reticulum	60.63	60.98
CDY19024	Canola	endoplasmic reticulum	58.91	60.47
CDY62840	Canola	endoplasmic reticulum	58.91	60.47
KRH53542	Soybean	endoplasmic reticulum	60.63	59.6
Bra022656.1-P	Field mustard	endoplasmic reticulum	58.33	59.53
CDX89227	Canola	endoplasmic reticulum	59.2	58.52
CDY49168	Canola	endoplasmic reticulum	57.47	58.48
AT4G27780.1	Thale cress	endoplasmic reticulum	59.2	58.19
GSMUA_Achr4P05400_001	Banana	cytosol	45.4	57.25
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	54.6	56.21
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	51.44	55.59
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	51.44	55.59
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	50.86	55.31
Zm00001d026639_P002	Maize	plasma membrane	51.72	54.88
EES13117	Sorghum	endoplasmic reticulum	52.59	54.79
Zm00001d001798_P002	Maize	plastid	51.44	54.57
Bra026307.1-P	Field mustard	endoplasmic reticulum	56.9	54.4
CDY29860	Canola	endoplasmic reticulum	37.36	51.59
Bra019027.1-P	Field mustard	endoplasmic reticulum	37.36	51.59
CDX92839	Canola	endoplasmic reticulum	23.85	49.7
KXG37573	Sorghum	cytosol	19.83	48.94
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.32	46.19
PGSC0003DMT400055408	Potato	vacuole	20.4	16.03

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.20	EntrezGene:102594570	MapMan:35.1	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:FERM/acyl-CoA-bd_prot_sf	GO:GO:0000062	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000582	InterPro:IPR002110	InterPro:IPR014352	InterPro:IPR020683	InterPro:IPR036770	UniProt:M1BL75
PFAM:PF00887	PFAM:PF12796	EnsemblPlantsGene:PGSC0003DMG400018524	PGSC:PGSC0003DMG400018524	EnsemblPlants:PGSC0003DMT400047661	PRINTS:PR00689
PRINTS:PR01415	ScanProsite:PS00414	PFscan:PS50088	PFscan:PS50297	PFscan:PS51228	PANTHER:PTHR24119
PANTHER:PTHR24119:SF0	InterPro:Profilin_CS	SMART:SM00248	SUPFAM:SSF47027	SUPFAM:SSF48403	TMHMM:TMhelix
UniParc:UPI000295BBCB	RefSeq:XP_006350518.1	SEG:seg	:	:	:

Description

Acyl-CoA-binding domain-containing protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400018524]

Coordinates

chr3:+:48103200..48108030

Molecular Weight (calculated)

38642.9 Da

IEP (calculated)

4.288

GRAVY (calculated)

-0.476

Length

348 amino acids

Sequence
(BLAST)

001: MADWQQYLQS IIFGLIFSFL LAKLFSIIFA FRDENLRITR ADSSEAEEKR SPEEADIIGV SEDTEPLIQR NDGGLKGSSV SGDEDSDDDW EGVESTELDE
101: AFSAATAFVA ATAADRSHKV SNEVQLQLYG LYKIATEGPC TAPQPSALKM TARAKWQAWQ KLGAMPPEEA MEKYLDIVTE LFPSWLDGSA NKKKGEESSG
201: VHNADTRRPM GPVFSTFISE EDSENELKLD EIHAFAREGD DENLLKCIES GIPVDVKDSE GRAPLHWAVD RGHLNITKLL LSRNADVNAK DLEGQTALHY
301: AAVCERGDIA EFLVKHGADV EIKDNEGDCP RDVCELHWPW LQQTTVHN

Best Arabidopsis Sequence Match ( AT5G53470.1 )
(BLAST)

001: MADWYQLAQS IIFGLIFAYL LAKLISILLA FKDENLSLTR NHTTQSEYEN LRKVETLTGI SGETDSLIAE QGSLRGDEDE SDDDDWEGVE STELDEAFSA
101: ATAFVAAAAS DRLSQKVSNE LQLQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIDLVTQLYP AWVEGGSKRR NRSGEAAGPM
201: GPVFSSLVYE EESDNELKID AIHAFAREGE VENLLKCIEN GIPVNARDSE GRTPLHWAID RGHLNVAEAL VDKNADVNAK DNEGQTSLHY AVVCEREALA
301: EFLVKQKADT TIKDEDGNSP LDLCESEWSW MREKKDSN

Arabidopsis Description

ACBP1Acyl-CoA-binding domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SM23]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.