Factsheet for TraesCS2B01G596900.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 4
endoplasmic reticulum 5
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G064900.1
TraesCS2A01G287200.1
TraesCS2B01G077100.1
TraesCS2B01G304100.1
TraesCS2D01G063000.1
TraesCS2D01G285700.1
TraesCS3A01G206100.1
TraesCS3B01G238100.1
TraesCS3D01G209500.1
TraesCS5A01G244000.1
TraesCS5B01G242000.1
TraesCS5D01G250700.1
TraesCS6A01G043000.1
TraesCS6B01G059000.1
TraesCS6D01G049600.1
TraesCS7A01G382700.1
TraesCS7B01G285400.1
TraesCS7D01G379100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	TraesCS2A01G064900.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS2A01G287200.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS2B01G077100.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS2B01G304100.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS2D01G063000.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS2D01G285700.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS3A01G206100.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS3B01G238100.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS3D01G209500.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS5A01G244000.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS5B01G242000.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS5D01G250700.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS6A01G043000.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS6B01G059000.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS6D01G049600.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS7A01G382700.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS7B01G285400.1	AT4G38580.1	18823312
AT4G27780.1	TraesCS7D01G379100.1	AT4G38580.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	91.25	90.68
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	90.94	90.37
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.06	80.08
EES13117	Sorghum	endoplasmic reticulum	76.56	73.35
Zm00001d001798_P002	Maize	plastid	75.0	73.17
Zm00001d026639_P002	Maize	plasma membrane	74.06	72.26
KXG37573	Sorghum	cytosol	27.5	62.41
GSMUA_Achr4P05400_001	Banana	cytosol	46.56	53.99
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	56.56	53.55
CDY62840	Canola	endoplasmic reticulum	55.62	52.51
AT5G53470.1	Thale cress	endoplasmic reticulum	55.31	52.37
Bra022656.1-P	Field mustard	endoplasmic reticulum	55.0	51.61
CDY49168	Canola	endoplasmic reticulum	55.0	51.46
Solyc03g082910.2.1	Tomato	nucleus	55.62	51.45
CDY19024	Canola	endoplasmic reticulum	54.38	51.33
KRH64393	Soybean	endoplasmic reticulum	55.31	51.16
PGSC0003DMT400047661	Potato	endoplasmic reticulum	55.31	50.86
KRH53542	Soybean	endoplasmic reticulum	55.94	50.56
AT4G27780.1	Thale cress	endoplasmic reticulum	54.69	49.44
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	54.06	49.29
CDX89227	Canola	endoplasmic reticulum	54.06	49.15
Bra026307.1-P	Field mustard	endoplasmic reticulum	52.81	46.43
Bra019027.1-P	Field mustard	endoplasmic reticulum	35.0	44.44
CDY29860	Canola	endoplasmic reticulum	35.0	44.44
CDX92839	Canola	endoplasmic reticulum	23.12	44.31
TraesCS4B01G227100.1	Wheat	endoplasmic reticulum, plasma membrane	14.69	8.83

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.20	MapMan:35.1	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:FERM/acyl-CoA-bd_prot_sf	GO:GO:0000062	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000582	InterPro:IPR002110	InterPro:IPR014352	InterPro:IPR020683	InterPro:IPR036770
PFAM:PF00887	PFAM:PF12796	PRINTS:PR00689	PFscan:PS50088	PFscan:PS50297	PFscan:PS51228
PANTHER:PTHR24119	PANTHER:PTHR24119:SF0	SMART:SM00248	SUPFAM:SSF47027	SUPFAM:SSF48403	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS2B01G596900	EnsemblPlants:TraesCS2B01G596900.1	TIGR:cd00204	SEG:seg	:	:

Description

No Description!

Coordinates

chr2B:+:780586546..780590446

Molecular Weight (calculated)

33454.8 Da

IEP (calculated)

4.109

GRAVY (calculated)

-0.300

Length

320 amino acids

Sequence
(BLAST)

001: MGGDWQELAQ SAVIGLIFAF LVAKLISVVL AFKEDNLRIT RSAPAPAPSP DATAPALDGG TSGGDGDSDG DWEGVESTEL DEDFSAASAF VAASAAGVPE
101: EAQLRLYGLY KIATEGPCTA PQPSALKLXX XXXXNAWNKL GAMPTEEAME EYITIVDEIF PNWADGSKKK DGETTMSASG SKGPMGPVFS SLMYEEDQGN
201: ESELGDIHVS AREGAIEDVK KHLAAGVQIN LRDSEERTPL HWAVDRGHLD AVEVLVNSNA DVNAQDNEGQ TALHYAVLCE REDIAELLVK HHADLQIKDG
301: DGNTARDLCS SAWPFMKPAN

Best Arabidopsis Sequence Match ( AT5G53470.1 )
(BLAST)

001: MADWYQLAQS IIFGLIFAYL LAKLISILLA FKDENLSLTR NHTTQSEYEN LRKVETLTGI SGETDSLIAE QGSLRGDEDE SDDDDWEGVE STELDEAFSA
101: ATAFVAAAAS DRLSQKVSNE LQLQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIDLVTQLYP AWVEGGSKRR NRSGEAAGPM
201: GPVFSSLVYE EESDNELKID AIHAFAREGE VENLLKCIEN GIPVNARDSE GRTPLHWAID RGHLNVAEAL VDKNADVNAK DNEGQTSLHY AVVCEREALA
301: EFLVKQKADT TIKDEDGNSP LDLCESEWSW MREKKDSN

Arabidopsis Description

ACBP1Acyl-CoA-binding domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SM23]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.