CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72748
CDX82214
CDX82392
CDX90282
CDX92094
CDX95906
CDY12089
CDY19582
CDY28337
CDY32408
CDY34977
CDY50075
CDY54628
CDY65011

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	CDX82392	AT3G16770.1	15159625
AT4G27780.1	CDX92094	AT3G16770.1	15159625
AT4G27780.1	CDX95906	AT3G16770.1	15159625
AT4G27780.1	CDY28337	AT3G16770.1	15159625
AT4G27780.1	CDY34977	AT3G16770.1	15159625
AT4G27780.1	CDY54628	AT3G16770.1	15159625
AT4G27780.1	CDX82214	AT3G21150.1	21798944
AT4G27780.1	CDY19582	AT3G21150.1	21798944
AT4G27780.1	CDY32408	AT3G21150.1	21798944
AT4G27780.1	CDY50075	AT3G21150.1	21798944
AT4G27780.1	CDX72748	AT4G38580.1	18823312
AT4G27780.1	CDX90282	AT4G38580.1	18823312
AT4G27780.1	CDY12089	AT4G38580.1	18823312
AT4G27780.1	CDY65011	AT4G38580.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026307.1-P	Field mustard	endoplasmic reticulum	93.75	90.66
CDY19024	Canola	endoplasmic reticulum	87.22	90.56
AT4G27780.1	Thale cress	endoplasmic reticulum	84.38	83.9
CDY62840	Canola	endoplasmic reticulum	73.58	76.4
CDY49168	Canola	endoplasmic reticulum	71.88	73.98
CDY29860	Canola	endoplasmic reticulum	50.28	70.24
CDX92839	Canola	endoplasmic reticulum	29.55	62.28
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	60.23	60.4
KRH64393	Soybean	endoplasmic reticulum	58.81	59.83
Solyc03g082910.2.1	Tomato	nucleus	58.52	59.54
PGSC0003DMT400047661	Potato	endoplasmic reticulum	58.52	59.2
KRH53542	Soybean	endoplasmic reticulum	59.09	58.76
GSMUA_Achr4P05400_001	Banana	cytosol	45.74	58.33
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	53.41	55.62
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	50.57	55.28
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	50.28	54.97
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	49.15	54.06
EES13117	Sorghum	endoplasmic reticulum	50.0	52.69
Zm00001d001798_P002	Maize	plastid	48.58	52.13
Zm00001d026639_P002	Maize	plasma membrane	48.58	52.13
KXG37573	Sorghum	cytosol	19.32	48.23
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	30.97	46.19
CDX92624	Canola	endoplasmic reticulum, vacuole	17.05	16.62
CDY10995	Canola	endoplasmic reticulum, golgi	17.05	16.57
CDY03471	Canola	vacuole	16.48	15.63
CDY34268	Canola	endoplasmic reticulum, vacuole	15.91	14.7

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.20	MapMan:35.1	GO:A0A078DJY5	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDX89227	ProteinID:CDX89227	ProteinID:CDX89227.1
InterPro:FERM/acyl-CoA-bd_prot_sf	GO:GO:0000062	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00149416001
InterPro:IPR000582	InterPro:IPR002110	InterPro:IPR014352	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00887
PFAM:PF13857	PRINTS:PR00689	PFscan:PS50088	PFscan:PS50297	PFscan:PS51228	PANTHER:PTHR24119
PANTHER:PTHR24119:SF0	SMART:SM00248	SUPFAM:SSF47027	SUPFAM:SSF48403	TMHMM:TMhelix	UniParc:UPI0004EDBD3B
SEG:seg	:	:	:	:	:

Description

BnaA01g16660D

Coordinates

chrLK031858:-:258867..261166

Molecular Weight (calculated)

38540.7 Da

IEP (calculated)

4.176

GRAVY (calculated)

-0.466

Length

352 amino acids

Sequence
(BLAST)

001: MGDWAQLAQS VIIGLIFSYL LAKLISIVVT FKEDNLSLTR HHDPEPESKN LKPEVDSRRI ESSTGEADSL VAEQGSSRGD SVAGDTEDED DDDWEGVEST
101: ELDEAFSAAT LFVTTAASDR LSQKVPSEVL QQLYGLYKIA TEGPCTAPQP SALKITARAK WQAWQKLGAM PPEEAMEKYI EIVTQLYPTW LDGGVKAGSG
201: SKDEAVSNTG GTMGPVFSSL VYEEESEIEL KIDAIHEFAR EGEVENLLKS IESGIPVNAK DSEGRTPLHW AIDRGHLDIA KLLVDKNADV NAKDNEGQTP
301: LHYAVVCDRE AIAEFLVKQK ANTASKDDDG NSPLDLCESD WPWLRETAKQ TD

Best Arabidopsis Sequence Match ( AT4G27780.1 )
(BLAST)

001: MGDWAQLAQS VILGLIFSYL LAKLISIVVT FKEDNLSLTR HPEESQLEIK PEGVDSRRLD SSCGGFGGEA DSLVAEQGSS RSDSVAGDDS EEDDDWEGVE
101: STELDEAFSA ATLFVTTAAA DRLSQKVPSD VQQQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIEIVTQLYP TWLDGGVKAG
201: SRGGDDAASN SRGTMGPVFS SLVYDEESEN ELKIDAIHGF AREGEVENLL KSIESGIPVN ARDSEGRTPL HWAIDRGHLN IAKVLVDKNA DVNAKDNEGQ
301: TPLHYAVVCD REAIAEFLVK QNANTAAKDE DGNSPLDLCE SDWPWIRDSA KQAD

Arabidopsis Description

ACBP2AtACBP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V3N7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.