Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001640.1-P | Field mustard | nucleus | 97.96 | 97.96 |
| CDY54628 | Canola | nucleus | 95.92 | 95.92 |
| CDY34977 | Canola | nucleus | 81.22 | 82.57 |
| CDY28337 | Canola | nucleus | 80.41 | 81.07 |
| AT3G16770.1 | Thale cress | nucleus | 80.41 | 79.44 |
| CDX95906 | Canola | nucleus | 78.78 | 79.1 |
| CDX92094 | Canola | nucleus | 75.92 | 76.86 |
| KRH12100 | Soybean | nucleus | 42.86 | 47.09 |
| KRH37061 | Soybean | nucleus | 43.27 | 44.73 |
| VIT_05s0077g01860.t01 | Wine grape | nucleus | 46.94 | 44.4 |
| Solyc01g065980.2.1 | Tomato | nucleus | 40.41 | 38.98 |
| CDY27480 | Canola | nucleus | 29.8 | 37.82 |
| CDY51428 | Canola | nucleus | 29.8 | 37.24 |
| PGSC0003DMT400043311 | Potato | nucleus | 40.0 | 37.12 |
| CDX72909 | Canola | nucleus | 26.94 | 35.11 |
| CDX68269 | Canola | nucleus | 29.8 | 33.03 |
| CDY50643 | Canola | nucleus | 29.39 | 31.72 |
| CDY37698 | Canola | mitochondrion | 20.82 | 30.18 |
| CDX96402 | Canola | nucleus | 28.16 | 27.6 |
| CDY53788 | Canola | golgi | 21.22 | 26.53 |
| CDX69647 | Canola | nucleus | 21.63 | 24.42 |
| CDY17191 | Canola | nucleus | 21.22 | 24.07 |
| CDY09787 | Canola | nucleus | 21.63 | 23.77 |
| CDY27952 | Canola | nucleus | 20.0 | 22.69 |
| CDX82492 | Canola | nucleus | 32.24 | 22.44 |
| CDX75756 | Canola | nucleus | 31.84 | 22.41 |
| CDX98435 | Canola | nucleus | 33.88 | 21.9 |
| CDY02492 | Canola | nucleus | 27.35 | 21.9 |
| CDY25681 | Canola | nucleus | 27.35 | 21.82 |
| CDY65334 | Canola | nucleus | 33.06 | 21.15 |
| CDY45310 | Canola | nucleus | 22.45 | 21.07 |
| CDY39107 | Canola | nucleus | 33.47 | 21.03 |
| CDX78517 | Canola | nucleus | 22.04 | 20.93 |
| CDX85656 | Canola | nucleus | 21.22 | 20.88 |
| CDY53152 | Canola | nucleus | 19.18 | 20.8 |
| CDY55173 | Canola | nucleus | 21.63 | 20.78 |
| CDX70498 | Canola | nucleus | 21.63 | 20.54 |
| CDX91131 | Canola | nucleus | 21.22 | 20.47 |
| CDY14051 | Canola | nucleus | 21.22 | 20.31 |
| CDX70027 | Canola | nucleus | 20.82 | 20.16 |
| CDX98982 | Canola | nucleus | 20.82 | 20.16 |
| CDX72481 | Canola | nucleus | 21.22 | 20.16 |
| CDX69054 | Canola | nucleus | 21.63 | 20.08 |
| CDX75430 | Canola | nucleus | 21.22 | 19.85 |
| CDX78288 | Canola | nucleus | 20.41 | 19.61 |
| CDY46253 | Canola | nucleus | 20.82 | 19.54 |
| CDX97559 | Canola | nucleus | 33.88 | 19.44 |
| CDX76278 | Canola | nucleus | 20.82 | 19.25 |
| CDX69056 | Canola | nucleus | 15.1 | 18.14 |
| CDY31304 | Canola | nucleus | 25.71 | 16.54 |
| CDY46821 | Canola | nucleus | 25.71 | 16.49 |
| CDY14506 | Canola | nucleus | 25.31 | 15.82 |
| CDY08853 | Canola | nucleus | 25.31 | 15.7 |
| CDX81250 | Canola | nucleus | 24.49 | 14.89 |
| CDY71587 | Canola | cytosol | 0.41 | 1.45 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078CZS9 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX82392 |
| ProteinID:CDX82392 | ProteinID:CDX82392.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00137514001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 |
| PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000067A4DF |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g34290D
Coordinates
chrLK031828:-:961421..962562
Molecular Weight (calculated)
27368.0 Da
IEP (calculated)
4.689
GRAVY (calculated)
-0.689
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAVISDF APSVTKAKGR KLTAEELWSE LDASACDDFW GFDSTFKLHS TKQQVTLKDE AANKEKEPAA TEKRKERKNV YRGIRKRPWG KWASEIRDPE
101: KGARVWLGTF NTAEEAAMAY DVAAKRIRGD KAKLNFPDLL HNPPQMLPSS PRPEDQPPVK KLCVSPQSEL TQSSFPVECI GFGNGDEFQN MSCGFGPDYD
201: LKQQISSLEY FLELDGTTPE QPSQLDESGS EVDLWMFDDV IASYG
101: KGARVWLGTF NTAEEAAMAY DVAAKRIRGD KAKLNFPDLL HNPPQMLPSS PRPEDQPPVK KLCVSPQSEL TQSSFPVECI GFGNGDEFQN MSCGFGPDYD
201: LKQQISSLEY FLELDGTTPE QPSQLDESGS EVDLWMFDDV IASYG
001: MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
Arabidopsis Description
RAP2-3Ethylene-responsive transcription factor RAP2-3 [Source:UniProtKB/Swiss-Prot;Acc:P42736]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.