CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72748
CDX82214
CDX82392
CDX90282
CDX92094
CDX95906
CDY12089
CDY19582
CDY28337
CDY32408
CDY34977
CDY50075
CDY54628
CDY65011

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	CDX82392	AT3G16770.1	15159625
AT4G27780.1	CDX92094	AT3G16770.1	15159625
AT4G27780.1	CDX95906	AT3G16770.1	15159625
AT4G27780.1	CDY28337	AT3G16770.1	15159625
AT4G27780.1	CDY34977	AT3G16770.1	15159625
AT4G27780.1	CDY54628	AT3G16770.1	15159625
AT4G27780.1	CDX82214	AT3G21150.1	21798944
AT4G27780.1	CDY19582	AT3G21150.1	21798944
AT4G27780.1	CDY32408	AT3G21150.1	21798944
AT4G27780.1	CDY50075	AT3G21150.1	21798944
AT4G27780.1	CDX72748	AT4G38580.1	18823312
AT4G27780.1	CDX90282	AT4G38580.1	18823312
AT4G27780.1	CDY12089	AT4G38580.1	18823312
AT4G27780.1	CDY65011	AT4G38580.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29860	Canola	endoplasmic reticulum	68.26	45.24
AT4G27780.1	Thale cress	endoplasmic reticulum	63.47	29.94
CDY19024	Canola	endoplasmic reticulum	60.48	29.79
CDX89227	Canola	endoplasmic reticulum	62.28	29.55
CDY62840	Canola	endoplasmic reticulum	53.89	26.55
GSMUA_Achr4P05400_001	Banana	cytosol	43.71	26.45
CDY49168	Canola	endoplasmic reticulum	52.69	25.73
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	48.5	25.16
Zm00001d001798_P002	Maize	plastid	49.1	25.0
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	52.1	24.79
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	47.31	24.53
EES13117	Sorghum	endoplasmic reticulum	48.5	24.25
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	48.5	23.96
PGSC0003DMT400047661	Potato	endoplasmic reticulum	49.7	23.85
Zm00001d026639_P002	Maize	plasma membrane	46.71	23.78
Solyc03g082910.2.1	Tomato	nucleus	49.1	23.7
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	44.31	23.12
KRH53542	Soybean	endoplasmic reticulum	48.5	22.88
KRH64393	Soybean	endoplasmic reticulum	47.31	22.83
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	24.55	17.37
KXG37573	Sorghum	cytosol	14.37	17.02
CDY03471	Canola	vacuole	27.54	12.4
CDX92624	Canola	endoplasmic reticulum, vacuole	26.35	12.19
CDY10995	Canola	endoplasmic reticulum, golgi	26.35	12.15
CDY34268	Canola	endoplasmic reticulum, vacuole	27.54	12.07

Protein Annotations

EnsemblPlants:CDX92839	EnsemblPlantsGene:GSBRNA2T00154672001	Gene3D:1.20.80.10	GO:A0A078DWL2	GO:GO:0000062	GO:GO:0003674
GO:GO:0005488	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf	InterPro:FERM/acyl-CoA-bd_prot_sf	InterPro:IPR000582	InterPro:IPR014352
PANTHER:PTHR23310	PANTHER:PTHR23310:SF96	PFAM:PF00887	PFscan:PS51228	ProteinID:CDX92839	ProteinID:CDX92839.1
SUPFAM:SSF47027	UniParc:UPI0004EF4CBC	MapMan:35.1	:	:	:

Description

BnaC07g40970D

Coordinates

chrLK031873:+:1059777..1060971

Molecular Weight (calculated)

18397.5 Da

IEP (calculated)

4.139

GRAVY (calculated)

-0.253

Length

167 amino acids

Sequence
(BLAST)

001: MFDCWLKRHA LAAIPWLISK VFFKFCLDRP SVYESSTVGG EADSVVAEQG SSRDEDDDWE GVESTELDEA FSAATLFIAT EGPCTAPQPP ALKLTARAKW
101: QAWRKLGAMP TEEAMEKYIE IVTQLYPTWL DCGLKAGSRN DAVSSSGGTM GPVFSSLVYE EESQNEL

Best Arabidopsis Sequence Match ( AT4G27780.1 )
(BLAST)

001: MGDWAQLAQS VILGLIFSYL LAKLISIVVT FKEDNLSLTR HPEESQLEIK PEGVDSRRLD SSCGGFGGEA DSLVAEQGSS RSDSVAGDDS EEDDDWEGVE
101: STELDEAFSA ATLFVTTAAA DRLSQKVPSD VQQQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIEIVTQLYP TWLDGGVKAG
201: SRGGDDAASN SRGTMGPVFS SLVYDEESEN ELKIDAIHGF AREGEVENLL KSIESGIPVN ARDSEGRTPL HWAIDRGHLN IAKVLVDKNA DVNAKDNEGQ
301: TPLHYAVVCD REAIAEFLVK QNANTAAKDE DGNSPLDLCE SDWPWIRDSA KQAD

Arabidopsis Description

ACBP2AtACBP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V3N7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.