CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72748
CDX82214
CDX82392
CDX90282
CDX92094
CDX95906
CDY12089
CDY19582
CDY28337
CDY32408
CDY34977
CDY50075
CDY54628
CDY65011

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	CDX82392	AT3G16770.1	15159625
AT4G27780.1	CDX92094	AT3G16770.1	15159625
AT4G27780.1	CDX95906	AT3G16770.1	15159625
AT4G27780.1	CDY28337	AT3G16770.1	15159625
AT4G27780.1	CDY34977	AT3G16770.1	15159625
AT4G27780.1	CDY54628	AT3G16770.1	15159625
AT4G27780.1	CDX82214	AT3G21150.1	21798944
AT4G27780.1	CDY19582	AT3G21150.1	21798944
AT4G27780.1	CDY32408	AT3G21150.1	21798944
AT4G27780.1	CDY50075	AT3G21150.1	21798944
AT4G27780.1	CDX72748	AT4G38580.1	18823312
AT4G27780.1	CDX90282	AT4G38580.1	18823312
AT4G27780.1	CDY12089	AT4G38580.1	18823312
AT4G27780.1	CDY65011	AT4G38580.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019027.1-P	Field mustard	endoplasmic reticulum	90.48	90.48
CDX92839	Canola	endoplasmic reticulum	45.24	68.26
CDY19024	Canola	endoplasmic reticulum	69.05	51.33
AT4G27780.1	Thale cress	endoplasmic reticulum	71.43	50.85
CDX89227	Canola	endoplasmic reticulum	70.24	50.28
CDY62840	Canola	endoplasmic reticulum	61.11	45.43
CDY49168	Canola	endoplasmic reticulum	60.71	44.74
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	56.35	40.46
GSMUA_Achr4P05400_001	Banana	cytosol	44.05	40.22
Solyc03g082910.2.1	Tomato	nucleus	51.98	37.86
KRH64393	Soybean	endoplasmic reticulum	51.59	37.57
PGSC0003DMT400047661	Potato	endoplasmic reticulum	51.59	37.36
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	50.0	37.28
KRH53542	Soybean	endoplasmic reticulum	51.98	37.01
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	46.83	36.65
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	46.43	36.34
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	44.44	35.0
Zm00001d001798_P002	Maize	plastid	44.84	34.45
EES13117	Sorghum	endoplasmic reticulum	45.24	34.13
Zm00001d026639_P002	Maize	plasma membrane	44.05	33.84
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.81	25.42
KXG37573	Sorghum	cytosol	12.7	22.7
CDY10995	Canola	endoplasmic reticulum, golgi	20.63	14.36
CDX92624	Canola	endoplasmic reticulum, vacuole	20.24	14.13
CDY03471	Canola	vacuole	19.44	13.21
CDY34268	Canola	endoplasmic reticulum, vacuole	19.44	12.86

Protein Annotations

Gene3D:1.20.80.10	MapMan:35.1	GO:A0A078GTN3	UniProt:A0A078GTN3	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf
EnsemblPlants:CDY29860	ProteinID:CDY29860	ProteinID:CDY29860.1	InterPro:FERM/acyl-CoA-bd_prot_sf	GO:GO:0000062	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00044304001	InterPro:IPR000582
InterPro:IPR014352	PFAM:PF00887	PRINTS:PR00689	PFscan:PS51228	PANTHER:PTHR23310	PANTHER:PTHR23310:SF96
SUPFAM:SSF47027	TMHMM:TMhelix	UniParc:UPI0004EE9624	:	:	:

Description

BnaA03g48810DBnaA03g48810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTN3]

Coordinates

chrLK032245:+:136350..137679

Molecular Weight (calculated)

27245.8 Da

IEP (calculated)

4.323

GRAVY (calculated)

-0.352

Length

252 amino acids

Sequence
(BLAST)

001: MGDLAQLAQS VILGLIVSYL LAKLISIVVT FKEDNLFLAR HSEPESEVDS GRVESSTVGG EAEQGSSRGE DDDWEGVEST ELDEAFSAAT LFVTTAAADR
101: LSRKVPGDVQ KQLYGLYKIA TEGPCTAPQP SALKLTARAK WQAWRKLGVM PTEEAMEKYI EIVTQLYPTW LHGGLKAGSR NDAGSSSGGT MGTVFSSLVY
201: EEESQNELKT DAIDAFAREG EVDREAIAEF LVKQKANTAS KDDEGNSTPR SL

Best Arabidopsis Sequence Match ( AT4G27780.1 )
(BLAST)

001: MGDWAQLAQS VILGLIFSYL LAKLISIVVT FKEDNLSLTR HPEESQLEIK PEGVDSRRLD SSCGGFGGEA DSLVAEQGSS RSDSVAGDDS EEDDDWEGVE
101: STELDEAFSA ATLFVTTAAA DRLSQKVPSD VQQQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIEIVTQLYP TWLDGGVKAG
201: SRGGDDAASN SRGTMGPVFS SLVYDEESEN ELKIDAIHGF AREGEVENLL KSIESGIPVN ARDSEGRTPL HWAIDRGHLN IAKVLVDKNA DVNAKDNEGQ
301: TPLHYAVVCD REAIAEFLVK QNANTAAKDE DGNSPLDLCE SDWPWIRDSA KQAD

Arabidopsis Description

ACBP2AtACBP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V3N7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.