Factsheet for Zm00001d026639_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

plastid: 22065420
plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004138_P001
Zm00001d027720_P001
Zm00001d034978_P001
Zm00001d052760_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	Zm00001d004138_P001	AT4G38580.1	18823312
AT4G27780.1	Zm00001d027720_P001	AT4G38580.1	18823312
AT4G27780.1	Zm00001d034978_P001	AT4G38580.1	18823312
AT4G27780.1	Zm00001d052760_P001	AT4G38580.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001798_P002	Maize	plastid	88.72	88.72
EES13117	Sorghum	endoplasmic reticulum	90.24	88.62
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	74.39	75.78
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	73.48	74.84
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	72.26	74.06
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.65	64.83
GSMUA_Achr4P05400_001	Banana	cytosol	46.95	55.8
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	56.1	54.44
CDY62840	Canola	endoplasmic reticulum	55.79	53.98
AT5G53470.1	Thale cress	endoplasmic reticulum	55.49	53.85
Solyc03g082910.2.1	Tomato	nucleus	55.49	52.6
Bra022656.1-P	Field mustard	endoplasmic reticulum	54.57	52.49
CDY49168	Canola	endoplasmic reticulum	54.27	52.05
PGSC0003DMT400047661	Potato	endoplasmic reticulum	54.88	51.72
CDY19024	Canola	endoplasmic reticulum	52.74	51.03
KRH64393	Soybean	endoplasmic reticulum	53.66	50.87
KRH53542	Soybean	endoplasmic reticulum	54.57	50.56
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	53.96	50.43
AT4G27780.1	Thale cress	endoplasmic reticulum	53.35	49.44
CDX89227	Canola	endoplasmic reticulum	52.13	48.58
CDX92839	Canola	endoplasmic reticulum	23.78	46.71
Bra026307.1-P	Field mustard	endoplasmic reticulum	51.52	46.43
CDY29860	Canola	endoplasmic reticulum	33.84	44.05
Bra019027.1-P	Field mustard	endoplasmic reticulum	33.84	44.05
Zm00001d015957_P001	Maize	plastid	11.59	12.38
Zm00001d028397_P001	Maize	endoplasmic reticulum, plasma membrane	16.46	9.93

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.20	Gene3D:1.25.40.960	EntrezGene:100274349	MapMan:35.1	ProteinID:AQK47323.1
InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	UniProt:B4FEY9
EMBL:BT035677	InterPro:FERM/acyl-CoA-bd_prot_sf	GO:GO:0000062	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000582	InterPro:IPR002110	InterPro:IPR014352
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00887	PFAM:PF12796	PRINTS:PR00689	PRINTS:PR01415
PFscan:PS50088	PFscan:PS50297	PFscan:PS51228	PANTHER:PTHR24119	PANTHER:PTHR24119:SF0	SMART:SM00248
SUPFAM:SSF47027	SUPFAM:SSF48403	TMHMM:TMhelix	UniParc:UPI00017B67EA	EnsemblPlantsGene:Zm00001d026639	EnsemblPlants:Zm00001d026639_P002
EnsemblPlants:Zm00001d026639_T002	SEG:seg	:	:	:	:

Description

Acyl-CoA-binding domain-containing protein 1

Coordinates

chr10:-:149258594..149261151

Molecular Weight (calculated)

35122.8 Da

IEP (calculated)

4.323

GRAVY (calculated)

-0.304

Length

328 amino acids

Sequence
(BLAST)

001: MAGDWQDLGQ AAAIGLLFAF LLAKLISTVI AFKEDNLRIT RSPPSSPTAA APAPATSPLP SQHDAAIGSG SDSDWEGVES TELDEEFSAA SAFVAASAAS
101: GTSVPEEAQL RLYGLYKIAT EGPCTGPQPS ALKLKARAKW NAWHKLGAMP TEEAMQEYIT IVQELFPNWD AGTSAKRKDE ESITSASASK GPMGPVFSSL
201: MYEEDEGNDS ELADIHVLAR EGATEDIVKF LAAGVEVNMR DTEGRTPLHW AVDRGHLSAV EVLAKANADL NAKDNEGQTA LHYAAVCERE DIAELLVKHH
301: ADLQIKDEDG NTAQDLCPPS WSFMNRAN

Best Arabidopsis Sequence Match ( AT4G27780.1 )
(BLAST)

001: MGDWAQLAQS VILGLIFSYL LAKLISIVVT FKEDNLSLTR HPEESQLEIK PEGVDSRRLD SSCGGFGGEA DSLVAEQGSS RSDSVAGDDS EEDDDWEGVE
101: STELDEAFSA ATLFVTTAAA DRLSQKVPSD VQQQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIEIVTQLYP TWLDGGVKAG
201: SRGGDDAASN SRGTMGPVFS SLVYDEESEN ELKIDAIHGF AREGEVENLL KSIESGIPVN ARDSEGRTPL HWAIDRGHLN IAKVLVDKNA DVNAKDNEGQ
301: TPLHYAVVCD REAIAEFLVK QNANTAAKDE DGNSPLDLCE SDWPWIRDSA KQAD

Arabidopsis Description

ACBP2AtACBP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V3N7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.